Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0974 ATGGACTTCGATCACCACCTCACGGAGCTTTCCGCCTCCTCGCCGTTCATTCCATCCGGCGAGGACTTCCACTTCTACTACAAATTCAGGAACTTCCGCCGCCCGATCGAGGAAATTGCGAGGAGAACGCAGTCGATGCTCGACAGAATCGGCTCCGCGGAGAACATTTGGGGCAGAGGCTCGGCGTTCCCCGGTGACGTCGACGACGCGTACGAGTGGCTCGTGAACGCGAACGACGACGTTTTGGAGCTGGTGGAGGAGCTGGTGGACGAGTTGCGGATGCTCAAGAAGGACGAGGGAGAGGAATGTGACGGCGCGAATCCGAAAGTGCCGTTTCATATACCGACGATCAAGAAGCCCCAGTATGCGTACAACATTGTGGTTGATAATTCAAACGAGCCTTTTGAGCATATTTTGTTGGAGAAGAGTGATGATGGTCAGCGTTACATTCATCCACTGGAGAAACTCTCTGTTTTGGATTTTGTTGATAAAGAAAATCTCGAGAATCTTGTGCCAGTAGAGCCTCCCTCAATAGAATGCACCCCTTTCAAGCTTGTGGAGGATGTCAAAGGATTGAAGGAGGTGGCTGCTATGCTGTCTTCAGTTAATGAATTTGCGGTGGATTTGGAACATAATCATTATCGGTCTTTCCAAGGTTTGACTTGCTTGATGCAAATCTCAACCAGGACTGAAGATTTTGTTATAGATACTCTGAAGGTCCGCAATCATGTTGGGCCATACCTGAGGGAAGTCTTCAAGGACCCTACCAAGAAGAAGGTCATGCATGGAGCAGATCGAGACATTGTGTGGCTGCAACGGGATTTTGGCATTTATGTTTGCAATATGTTCGATACTGGCCAGTCTTCAAGAGTGTTAAAGTTGGACAGATATAGTCTGCAATATCTTTTGCAACAGTTTTGTGGGGTTACTGCAAACAAGGAATACCAGAGTGCAGATTGGAGATTACGCCCTCTTCCTGATGTGATGCTAAGATATGGCAGAGAAGATACACACTATCTGCTTTATATATATGATTTAATGAGGATCAAATTATTTGCATTGTCTAAGGAGTCTGAAGGTTCTGATAATCCTCTACTGGAGGTTTACAAGCGCAGTTATGATGTCTGCATGCAGCTATACGAGAAAGAGCTGCTGAAAGAAGACTCGTACCTTCATATATGGGGGTTGCGAGGGGCTGGTTTTAATGCTCAGCAGCTTGCCGTTGTTTCAGGGCTTTGGGAATGGCGTGACGGTCTTGCTCGTGCAGACGATGAAGGTCCTGGCTATGTATTGCCAAATAGAATTATTCTTGAAATCGCTAACCAGATGCCTGTCATTATAAGCAATCTACGGCGAATAGTAGGAAGGACAAAACACCCATATATTGAGCGCAGCCTTGATGTCATTGTCAACATTGTCAGACATTCTATGCAAAATGCTGCTGCCTTTGAAGAGGTTGCACTACGTTTGAAAGAAGAACATGCTGCAAGTTTGTCAAATGTGATACCCGTTAAGGATGGAACTGAATTACCTCGTACACTACAAAAGGATGGATGTGCAGCAAGAGGAAGCATGGGAATTGAAAATGGCTCCTGTGTTGATATCACACAAAACTGTATGCTTTCTTATGACCTAGAGGAAAAAAGTTTTCAGCATCAAGTTGAAGATGGACTATCCGATTCTCTCAATTCAGATCTACTAAGGGTCAGTCCCACTATTCCATACAAGAATCGGGATAATGCAAATGTTATTGTACTCTCTACAGCAAAGGTCAAGAAGGAGATCAAGCCAGACCAGATTAGATCGTCGTTAAATATTCCATCTCCCTTATTGTTGGGCAACAATGAGAAGTCAAGACTAGTTGCAGAAACTCCAAGTGTAACATATGAAACATCATACTCAAGGAAGAAACTTGTTTCAGGTTCACCTTCTACCTCCAACCCTATTGGGATGATGGTAATGGTAGATTCAGGCAAGGAAGAGAAGATGAACGATGAGTAA 2001 0.4478 MDFDHHLTELSASSPFIPSGEDFHFYYKFRNFRRPIEEIARRTQSMLDRIGSAENIWGRGSAFPGDVDDAYEWLVNANDDVLELVEELVDELRMLKKDEGEECDGANPKVPFHIPTIKKPQYAYNIVVDNSNEPFEHILLEKSDDGQRYIHPLEKLSVLDFVDKENLENLVPVEPPSIECTPFKLVEDVKGLKEVAAMLSSVNEFAVDLEHNHYRSFQGLTCLMQISTRTEDFVIDTLKVRNHVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYVCNMFDTGQSSRVLKLDRYSLQYLLQQFCGVTANKEYQSADWRLRPLPDVMLRYGREDTHYLLYIYDLMRIKLFALSKESEGSDNPLLEVYKRSYDVCMQLYEKELLKEDSYLHIWGLRGAGFNAQQLAVVSGLWEWRDGLARADDEGPGYVLPNRIILEIANQMPVIISNLRRIVGRTKHPYIERSLDVIVNIVRHSMQNAAAFEEVALRLKEEHAASLSNVIPVKDGTELPRTLQKDGCAARGSMGIENGSCVDITQNCMLSYDLEEKSFQHQVEDGLSDSLNSDLLRVSPTIPYKNRDNANVIVLSTAKVKKEIKPDQIRSSLNIPSPLLLGNNEKSRLVAETPSVTYETSYSRKKLVSGSPSTSNPIGMMVMVDSGKEEKMNDE* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0974 666 Gene3D HRDC domain 390 485 IPR044876 -
Gso19g0974 666 PANTHER 3'-5' EXONUCLEASE 1 648 - -
Gso19g0974 666 Pfam PMC2NT (NUC016) domain 12 92 IPR012588 GO:0000176|GO:0006396
Gso19g0974 666 ProSiteProfiles HRDC domain profile. 402 483 IPR002121 GO:0003676
Gso19g0974 666 SUPERFAMILY Ribonuclease H-like 117 382 IPR012337 -
Gso19g0974 666 Pfam 3'-5' exonuclease 185 348 IPR002562 GO:0003676|GO:0006139|GO:0008408
Gso19g0974 666 SUPERFAMILY HRDC-like 387 478 IPR010997 GO:0000166|GO:0044237
Gso19g0974 666 Gene3D - 111 389 IPR036397 GO:0003676
Gso19g0974 666 SMART 35exoneu6 183 352 IPR002562 GO:0003676|GO:0006139|GO:0008408
Gso19g0974 666 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 1 648 IPR045092 GO:0000175|GO:0000467
Gso19g0974 666 CDD Rrp6p_like_exo 179 371 - -
Gso19g0974 666 Pfam HRDC domain 405 459 IPR002121 GO:0003676
Gso19g0974 666 Coils Coil 78 98 - -
Gso19g0974 666 SMART hrdc7 402 479 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0974 Gso-Chr19 36988500 37005226 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0974 K12591 - gmx:100804872 1239.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0738 5 14637738 14660963 Gso19g0974 19 36988500 37005226 GST