Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0675 ATGTCTGTGAACAATAATAACCCTTCTAAGGGCATTGGGGCCTCTTCCTCAACCTTTGGCAATGCTGGAATACCCTCCAATTCTATACCTTCAAACCCTGGTTTTTCACAGTCCCAAGGACAAGCCCAGATTCCTGTTGGTTTTCAAGGGCAGTTTCCACTGTCCCAGGCCCATGCTATTGTCCAAGCTCAGTCCAAGGCCCAGGCCCAGGCCCAGGCCCAAGCAGCAGCTGCGGCCCATGCTCAACTCCAGGCTCATTTGCAAGCTCAGGGGTTGAGTCTTAATCAGAACCAGGCTGGTGGTTTGGGTGTGTCGTCGCCGTCGATTTCCACGCCGGGTAATGCGAGTGGGAAACGGATCCCTATGAAACCCCCCATGCGGCCGGTTGGGTTTTCCCCTCCCAACAGCTTCTCGCCTTTGAGACCGATGGAGCTCACGCCTGCTGCTCGGAGGAAGAAGCAGAAGCTCCCCGAGAAACAGCTGCAAGATAAAGTGGCTGCTATTCTGCCCGAGTCTGCGTTGTATACGCAGCTTCTCGAGTTTGAGTCTCGCGTTGACGCTGCACTTGCTAGAAAGAAGGCTGACATCCAGGAAGCGCTCAAAAACCCGCCATGTATTCAGAAAACTCTTCGTATTTATGTATTTAATACTTTTGCTAATCAAATTCGCACGATTCCGAAGAAGCCAAATGTGGAGCCTCCAACCTGGACGCTAAAGATAGTTGGGAGGATATTGGAGGATGGTGTTGACCCTGATCAGCCAGGAGTAGTTCAGAAGTCGTCTCCTTTGTATCCAAAGTTTTCAGCTTTCTTTAAAAGAGTAACCATTTCTTTGGATCAGAGACTTTATCCCGATAATCACATTATTTTGTGGGAGAATGCTCGATCACCTGCTCCACATGAAGGTTTTGAAGTAAAGAGGAAAGGGGATAAAGAATTTACAGTGAATATACGGCTGGAAATGAATTATGTGCCAGAGAAGTTTAAGCTTTCACCAGCTTTGACAGAAGTTCTTGGTATTGAGGTTGATACCCGCCCGAGAATTGTTGCTGCGATCTGGCACTATGTGAAGGCTAGGAAATTGCAAAACCCAAATGACCCTTCTTACTTTCACTGTGATCCGCCTCTTCAGAAAGTATTTGGAGAAGAAAATATGAAGTTTACAATGGTTTCTCAGAAAATATCATCTCATTTGTTCCCCCCACAGCCTATACTTTTGGAGCATAAGATTAAGCTCTCTGGAAACAGTCCTGCTGGTACTGCTTGTTATGATGTGATGGTTGATGTTCCTTTTCCTATTCAGAGGGAGTTGTCTGCTTTATTGGCTAACGTGGAAAAGAACAAAGATATTGAGACATGTGATGAAGCAATATGTGGAATCATTAGAAAAATCCACGAGCACCGTAGGAGACGGGCATTCTTTCTTGGTTTCAGTCAATCGCCAGTAGAATTTATTAATGCATTGATTGAATCTCAAAGCAGGGATCTGAAACTTGTATCCGGAGAACCTAGTCGCAATGCAGAAAAAGAGCGTCGTTCAGATTTCTTCAACCAACCATGGGTTGAAGATGCTGTTATTCGTTACCTGAATCGCAAACCAGCTGCGGGAAGTGATGCTCCAGGAAGCACATGA 1632 0.462 MSVNNNNPSKGIGASSSTFGNAGIPSNSIPSNPGFSQSQGQAQIPVGFQGQFPLSQAHAIVQAQSKAQAQAQAQAAAAAHAQLQAHLQAQGLSLNQNQAGGLGVSSPSISTPGNASGKRIPMKPPMRPVGFSPPNSFSPLRPMELTPAARRKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDAALARKKADIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPNVEPPTWTLKIVGRILEDGVDPDQPGVVQKSSPLYPKFSAFFKRVTISLDQRLYPDNHIILWENARSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPALTEVLGIEVDTRPRIVAAIWHYVKARKLQNPNDPSYFHCDPPLQKVFGEENMKFTMVSQKISSHLFPPQPILLEHKIKLSGNSPAGTACYDVMVDVPFPIQRELSALLANVEKNKDIETCDEAICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLKLVSGEPSRNAEKERRSDFFNQPWVEDAVIRYLNRKPAAGSDAPGST* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0675 543 CDD SWIB_like 330 398 - -
Gso5g0675 543 SUPERFAMILY SWIB/MDM2 domain 318 408 IPR036885 -
Gso5g0675 543 Pfam SWIB/MDM2 domain 327 398 IPR003121 -
Gso5g0675 543 MobiDBLite consensus disorder prediction 98 115 - -
Gso5g0675 543 MobiDBLite consensus disorder prediction 98 142 - -
Gso5g0675 543 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 92 535 - -
Gso5g0675 543 MobiDBLite consensus disorder prediction 1 43 - -
Gso5g0675 543 Gene3D SWIB/MDM2 domain 320 404 IPR036885 -
Gso5g0675 543 ProSiteProfiles SWIB/MDM2 domain profile. 323 400 IPR003121 -
Gso5g0675 543 SMART swib_2 324 403 IPR019835 -
Gso5g0675 543 PANTHER SWIB/MDM2 DOMAIN-CONTAINING PROTEIN-RELATED 92 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0675 Gso-Chr5 10370492 10373966 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gso5g0675 SWIB 1.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0675 K11650 - gmx:100776562 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0675 5 10370492 10373966 Gso19g0628 19 24467224 24470513 GST
Gso19g0786 19 32226671 32229228 Gso5g0675 5 10370492 10373966 PCT
Gso5g0675 5 10370492 10373966 Gso19g0786 19 32226671 32229228 PCT