Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0786 ATGTCTATGAACAACAACAACCCTTCCAATCCCTATGGACCCTCTTCCACCGCCAACCCACATTCCCAAATTACCCCTGGCCAGGGCCAGTATCCCCGGTCCCAGGCCCACGCCATCATCCAAGCCCAGTTCCAGGCCCAGCTCCAAGCCCACGGGCTCACCCTCAACCCCAACGCCAAGCGTTTCCCTCCAAAACCCCCTATTCACACCGCCACCACGCCGTTTAAACAAACGGAACCCGCTCCCACCGTACCGGCTCGAAGGAAGAAGCATAAACCAAACGAGAAACATCTTCCTGAGAAAGCCTTAGCAATTCTCCCAGAATCGGAGATTTACACGCAGCTTCTCGACATAGAAGCGCGTGTGGACGCTGCACTCGTGAGAAAGAAGGTTGACATACAGGAGGCACTGAAAAACCCACCCTGCATTCAGAAAACGCTGAGAATCTTCGTGTTCAACACGTTCGCGAACCAGAGCAGCGCGGATTCCTCGGCTCCCACGTGGACTCTTAAGATAGTTGGGAGGATTTTGGAAGATGGTGAGGACCCTGAACAGGCAGGGGATGTTGCTGCCCAGAGGATGATGCCCCCTTTGTATCCAAAATTCTCCGCGTTTTTTAAACGAGTAACGATTTATCTTGACAAGAGGCTGTATCCAGATAACAATGTCATCTCTTGGGAGAATTCGCGGTCCTCGGCCGCTCACGAAGGTTTTGAGGTGAAGAGGAAGGGTGACAGGGAGTTCCCGGCGCAGATTCGGTTGGAGATGAATTACATGCTGGAGAAGTTTATGCTGTCCCCCGCGTTGAGAGAAGTGCTTGGTGTTCAGGTTGACACGCGGGCGAGGATTGTTTCCGCAATCTGGCATTATGTGAAGGCGAGGAAATTGCAGATCCCGAATGATCCTTCGTTCTTTCACTGCGATCAGGCTCTGCAGAGGGTGTTTGGGGAGGATAAGGTGAAGTTCACGATGGTTTCACAGAAGATTTCGCAGCATTTGTTTCCTCCACAGGTTATACTTTTGGAGCATATGATCAAGCTCTCCGGGAATAGTCCGGTTGGGTCTGCTTGTTATGATGTGATGGTTGATGTTCCTTTTCCCATTCAGAGGGAATTGAATGCTCTGGTGGCCAATGTGGAGAGGACCAAAGAGATCGATGCATGTGATGAGTCCATATGTGGAATCATTAGAAAAATACACGAGCACCGAAGGAGGCGAGCATTCTTTGTTGGTTTTAGTCAGTCTCCTCTGGAATTTATTAAGGCCTTGGTTGAATCTCAAAACAAGGATCTGAAAGTTTTACTTGGAGAATCTCGTCACAATGCTGAAAAGGACCGCAAGTCAGATTTCTTTAAGCAACCCTGGGTTGAGGATGCTATTGTGCGCTATTTGAATCGCAAACCAGCTGCAGGAAGCGATGCTCCAGGGAGCACATAA 1437 0.5003 MSMNNNNPSNPYGPSSTANPHSQITPGQGQYPRSQAHAIIQAQFQAQLQAHGLTLNPNAKRFPPKPPIHTATTPFKQTEPAPTVPARRKKHKPNEKHLPEKALAILPESEIYTQLLDIEARVDAALVRKKVDIQEALKNPPCIQKTLRIFVFNTFANQSSADSSAPTWTLKIVGRILEDGEDPEQAGDVAAQRMMPPLYPKFSAFFKRVTIYLDKRLYPDNNVISWENSRSSAAHEGFEVKRKGDREFPAQIRLEMNYMLEKFMLSPALREVLGVQVDTRARIVSAIWHYVKARKLQIPNDPSFFHCDQALQRVFGEDKVKFTMVSQKISQHLFPPQVILLEHMIKLSGNSPVGSACYDVMVDVPFPIQRELNALVANVERTKEIDACDESICGIIRKIHEHRRRRAFFVGFSQSPLEFIKALVESQNKDLKVLLGESRHNAEKDRKSDFFKQPWVEDAIVRYLNRKPAAGSDAPGST* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0786 478 SUPERFAMILY SWIB/MDM2 domain 253 343 IPR036885 -
Gso19g0786 478 MobiDBLite consensus disorder prediction 55 95 - -
Gso19g0786 478 Pfam SWIB/MDM2 domain 262 333 IPR003121 -
Gso19g0786 478 ProSiteProfiles SWIB/MDM2 domain profile. 258 335 IPR003121 -
Gso19g0786 478 Gene3D SWIB/MDM2 domain 255 338 IPR036885 -
Gso19g0786 478 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 53 475 - -
Gso19g0786 478 MobiDBLite consensus disorder prediction 1 33 - -
Gso19g0786 478 SMART swib_2 259 338 IPR019835 -
Gso19g0786 478 PANTHER SWI/SNF COMPLEX COMPONENT SNF12 HOMOLOG ISOFORM X1 53 475 - -
Gso19g0786 478 CDD SWIB_like 265 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0786 Gso-Chr19 32226671 32229228 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gso19g0786 SWIB 9.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0786 K11650 - gmx:100785069 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0786 19 32226671 32229228 Gso5g0675 5 10370492 10373966 PCT
Gso19g0786 19 32226671 32229228 Gso19g0628 19 24467224 24470513 PCT
Gso5g0675 5 10370492 10373966 Gso19g0786 19 32226671 32229228 PCT
Gso19g0628 19 24467224 24470513 Gso19g0786 19 32226671 32229228 PCT