Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0571 ATGGGTTGTTTCCACTCTAAGTCAGCGAGGCAGTTTCCTGCACAGGAGAATACTGTTAATCTTGCGGCAGAGACAGCTTTTACTGTCAGTGAGGTTGAAGCACTGTTTGAGCTTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAGGAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTTGCAAACCGGATCTTTGATTTATTTGATGTCAAGAAGAAGGGAGTCATTGACTTCGAAGACTTTGTTAGATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGGTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAGACTTTCGTGGAAGCTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAGTGGGAAACTTTTGTTAAAAAGAATCCGTCACTATTAAAAATCATGACCCTTCCTTATCTGAGGGACATAACAACATCTTTCCCAAGTTTTATATTTAACTCTAATGTGGATGAGATTACTGCTTAA 642 0.3894 MGCFHSKSARQFPAQENTVNLAAETAFTVSEVEALFELFRSISSSVVDDGLISKEEFQLAIFKNKKKDNLFANRIFDLFDVKKKGVIDFEDFVRSLNVFHPNASLEDKIAFSFRLYDLHNTGFIERPEVKQMLIALLFESDMKLADDVIETILDKTFVEADLNQDGKIDTEEWETFVKKNPSLLKIMTLPYLRDITTSFPSFIFNSNVDEITA* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0571 213 PRINTS Recoverin family signature 75 96 - -
Gso5g0571 213 PRINTS Recoverin family signature 122 140 - -
Gso5g0571 213 PRINTS Recoverin family signature 168 188 - -
Gso5g0571 213 PANTHER CALCINEURIN B 1 212 IPR045198 GO:0005509|GO:0019722|GO:0019900
Gso5g0571 213 Pfam EF-hand domain pair 107 177 IPR002048 GO:0005509
Gso5g0571 213 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Gso5g0571 213 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Gso5g0571 213 SUPERFAMILY EF-hand 21 202 IPR011992 -
Gso5g0571 213 PANTHER BNAC07G34450D PROTEIN 1 212 - -
Gso5g0571 213 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Gso5g0571 213 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Gso5g0571 213 Gene3D - 18 211 - -
Gso5g0571 213 SMART efh_1 108 136 IPR002048 GO:0005509
Gso5g0571 213 SMART efh_1 71 99 IPR002048 GO:0005509
Gso5g0571 213 SMART efh_1 152 180 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0571 Gso-Chr5 6699028 6708501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0571 1 213 EF-hand Containing Proteins AT4G17615 77.465 1.86e-121 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0571 K06268 - gmx:100527380 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0571 5 6699028 6708501 Gso17g1257 17 12333206 12337484 GST
Gso11g0334 11 2806873 2809058 Gso5g0571 5 6699028 6708501 PCT
Gso5g0571 5 6699028 6708501 Gso11g0334 11 2806873 2809058 PCT