Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1257 ATGAATTATTGGAGGGTTGAATTGTTTATTATTTATATAATATGGTGTTTCAATTTGGTTGGAATTGGAAAAGTTAAGATGGTTTTGATGATATATATTTCAGTTAAGTTCGAGTACACCGGTACTGTGCTGTGCTGCCTTACCTGCATTTCTTCCATAATGGGCTGCATGAACTCGAAGTCTGTGAGGAAGTTTCCGGCACGGGAGGATTCTCTTGATCTTGCAGCGGAGACAGCTTTTACTGTCAATGAGGTTGAAGCACTGTTTGTGCTTTTTAGGAGCATCAGCAATTCTATTGTCAATGATGGACTGCTAAGCAAGGAAGAATTTCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACATTTTTGCAAATCGGATCTTTGATTTATTTGATGTCAAGAAGCTTGGAGTCGTTGACTTCGAAGACTTTGTCAGATCTCTCAATGTTTTCCACCCAAATGCTTCATTAAAAGACAAGATAGCTTTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGGTCAAGGAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAGACTTTCGTGGAAGCTGACCTAAAGCAAGATGGGAAAATCGACACTGAAGAGTGGGAAACTTTTGTTAAAAGGAATCCGTCAGTATTAAAAATCATGACCCTACCTTATCTGAGGGACATAACAATATCTTTCCCAAGTTTTATTTTTAACAGCACTAACGTGGAAAGGGTTGATGAAACAAGTACAAGGCTTTAG 819 0.3773 MNYWRVELFIIYIIWCFNLVGIGKVKMVLMIYISVKFEYTGTVLCCLTCISSIMGCMNSKSVRKFPAREDSLDLAAETAFTVNEVEALFVLFRSISNSIVNDGLLSKEEFQLAIFKNKKKDNIFANRIFDLFDVKKLGVVDFEDFVRSLNVFHPNASLKDKIAFSFRLYDLHNTGFIERPEVKEMLIALLFESDMKLADDVIETILDKTFVEADLKQDGKIDTEEWETFVKRNPSVLKIMTLPYLRDITISFPSFIFNSTNVERVDETSTRL* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1257 272 PANTHER BNAC07G34450D PROTEIN 54 263 - -
Gso17g1257 272 PANTHER CALCINEURIN B 54 263 IPR045198 GO:0005509|GO:0019722|GO:0019900
Gso17g1257 272 ProSiteProfiles EF-hand calcium-binding domain profile. 120 155 IPR002048 GO:0005509
Gso17g1257 272 ProSiteProfiles EF-hand calcium-binding domain profile. 157 192 IPR002048 GO:0005509
Gso17g1257 272 SUPERFAMILY EF-hand 74 254 IPR011992 -
Gso17g1257 272 ProSiteProfiles EF-hand calcium-binding domain profile. 201 236 IPR002048 GO:0005509
Gso17g1257 272 Gene3D - 71 264 - -
Gso17g1257 272 PRINTS Recoverin family signature 128 149 - -
Gso17g1257 272 PRINTS Recoverin family signature 175 193 - -
Gso17g1257 272 PRINTS Recoverin family signature 221 241 - -
Gso17g1257 272 Pfam EF-hand domain pair 160 230 IPR002048 GO:0005509
Gso17g1257 272 SMART efh_1 205 233 IPR002048 GO:0005509
Gso17g1257 272 SMART efh_1 161 189 IPR002048 GO:0005509
Gso17g1257 272 SMART efh_1 124 152 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1257 Gso-Chr17 12333206 12337484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1257 54 270 EF-hand Containing Proteins AT4G17615 68.664 1.75e-106 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1257 K06268 - gmx:100811767 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0571 5 6699028 6708501 Gso17g1257 17 12333206 12337484 GST
Gso11g0334 11 2806873 2809058 Gso17g1257 17 12333206 12337484 PCT
Gso17g1257 17 12333206 12337484 Gso11g0334 11 2806873 2809058 PCT