Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0349 ATGGATCCCCACCCAGGAAACCACCCCATTCTCTCCTACGTCATGTCCCGTCTCCCTTCCTTCGGCGCCAGAACCCCCACCGCCGTTTCCCCTTCCCATTCCCATAATTTCGACATCGAACAACCACCTTCCTCTTCTTCTCCTTCATCAGTCGTCGGCCAAATGCCCAATCTCGCCGACCCTGAAATGTTGGCCTCCATGACCCGCGCCATCTCCGACGTCTCCCAGACCCGATCCGTCCTCAAGCTCATCGGGGCCCGCCCCACCCACGAGCAGGTGGACGACGCCAAGGCCAGACTCGCCGACCTCGAGGCCCATCTCTCCCGCCAGCTCCAAGAGATCGTGGGCCTCCCCAGGCCCCCCGAGATCGATGAGCCCCGCTGGCGGGCCCATGTCGCCGAGAAAGAAAATGCCATCAAGGAATCCACGGAGAAAGAGAAGCGCGTCCTCAAGTCGCTGATTCAGCTCGACCAGATGCACGATTCCTACGAGAAGCTCCTCAAGGACGCCGAGAAGCGACTCGTCAAGATTTACGAGGGCGATGGCGAAAGCGACAACGACAACAACAACGACAACGAGGGTGAGGTAAAAGAAGAGGTTGAGGAGATACTGCATGAGGCCCACGGAAAAGGCATCGAGCGGGTGGATCTTTCCGGGAAGCGCCTCAAGCTCCTGCCTCCAGCGTTTGGCCACATTCCTGCATTGGTCGTGCTCGATGTCTCCACCAATCAACTCTCGGTGATTCCTGATTCGATATCCGGATTGGCAAATCTCGAGGAGCTTAATCTCTCTTCCAATGCTTTGGAGTCACTGCCAGATTCAATTGGCTTGTTGCAGAAGTTGAAATTCCTCAATGTGTCTGGAAACAAGCTCAGTGCTCTTCCTGATTCCATCAGTCAGTGCAGGTCATTGGTGGAGCTAGATGCAGGCTTTAATAGCCTGACATATTTGCCAACAAACATTGGATATGAATTGCTTAATTTACAGAAGCTCATGATTCAGCTGAACAAGATTCGGTCTCTTCCCTCATCTGTTTGCGAGATGAAATCCTTGCGCTATCTGGATGCTCACTTCAATGAACTGCGCGGGCTTCCTATTGCAATTGGGAAATTGACTAATCTTGAAGTTCTAAACCTGAGCAGCAACTTCAGTGACCTTAGAGAACTTCCAGAGACATTTGGTGATCTGATTAGCCTCAGGGAATTGGACCTCAGCAACAACCAAATTCATGCACTTCCTGACACATTTGGTCGCCTTGATAGTTTGACCAAGCTAAACTTGGACCAGAATCCTGTTGAAGTTCCACCTATGGAGATTGTGAATCAAGGGGTCCAAGCCGTGAAGAGTTTCATGGTCCAGAGGTGGATTGATATATTGGCAGAGGAAGAAAGAAAAAGCACGCAAGTGTTGCAAGAAGGAGAGAATGACTGGTTAACACGAAGCACCTCTTGGCTGAAGAATGTTTCTGAAAATGTAACTGAGATGATTATGTCCCCCAGAACTCCCAAGGAATCTTTTCTTGATCAGCAGCTATGA 1536 0.5111 MDPHPGNHPILSYVMSRLPSFGARTPTAVSPSHSHNFDIEQPPSSSSPSSVVGQMPNLADPEMLASMTRAISDVSQTRSVLKLIGARPTHEQVDDAKARLADLEAHLSRQLQEIVGLPRPPEIDEPRWRAHVAEKENAIKESTEKEKRVLKSLIQLDQMHDSYEKLLKDAEKRLVKIYEGDGESDNDNNNDNEGEVKEEVEEILHEAHGKGIERVDLSGKRLKLLPPAFGHIPALVVLDVSTNQLSVIPDSISGLANLEELNLSSNALESLPDSIGLLQKLKFLNVSGNKLSALPDSISQCRSLVELDAGFNSLTYLPTNIGYELLNLQKLMIQLNKIRSLPSSVCEMKSLRYLDAHFNELRGLPIAIGKLTNLEVLNLSSNFSDLRELPETFGDLISLRELDLSNNQIHALPDTFGRLDSLTKLNLDQNPVEVPPMEIVNQGVQAVKSFMVQRWIDILAEEERKSTQVLQEGENDWLTRSTSWLKNVSENVTEMIMSPRTPKESFLDQQL* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0349 511 SUPERFAMILY L domain-like 208 437 - -
Gso5g0349 511 Coils Coil 93 113 - -
Gso5g0349 511 Gene3D Ribonuclease Inhibitor 129 321 IPR032675 -
Gso5g0349 511 Gene3D Ribonuclease Inhibitor 323 452 IPR032675 -
Gso5g0349 511 SMART LRR_typ_2 255 277 IPR003591 -
Gso5g0349 511 SMART LRR_typ_2 232 254 IPR003591 -
Gso5g0349 511 SMART LRR_typ_2 278 301 IPR003591 -
Gso5g0349 511 SMART LRR_typ_2 371 395 IPR003591 -
Gso5g0349 511 SMART LRR_typ_2 325 348 IPR003591 -
Gso5g0349 511 SMART LRR_typ_2 396 419 IPR003591 -
Gso5g0349 511 SMART LRR_typ_2 302 324 IPR003591 -
Gso5g0349 511 ProSiteProfiles Leucine-rich repeat profile. 398 419 IPR001611 GO:0005515
Gso5g0349 511 MobiDBLite consensus disorder prediction 24 53 - -
Gso5g0349 511 ProSiteProfiles Leucine-rich repeat profile. 280 301 IPR001611 GO:0005515
Gso5g0349 511 ProSiteProfiles Leucine-rich repeat profile. 257 278 IPR001611 GO:0005515
Gso5g0349 511 PANTHER LEUCINE-RICH REPEAT-CONTAINING 4 500 - -
Gso5g0349 511 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 4 500 - -
Gso5g0349 511 SMART LRR_bac_2 396 415 - -
Gso5g0349 511 SMART LRR_bac_2 255 274 - -
Gso5g0349 511 SMART LRR_bac_2 348 367 - -
Gso5g0349 511 SMART LRR_bac_2 371 392 - -
Gso5g0349 511 SMART LRR_bac_2 278 297 - -
Gso5g0349 511 SMART LRR_bac_2 325 344 - -
Gso5g0349 511 SMART LRR_bac_2 232 251 - -
Gso5g0349 511 SMART LRR_bac_2 301 320 - -
Gso5g0349 511 Pfam Leucine rich repeat 390 431 IPR001611 GO:0005515
Gso5g0349 511 Pfam Leucine rich repeat 327 382 IPR001611 GO:0005515
Gso5g0349 511 Pfam Leucine rich repeat 213 268 IPR001611 GO:0005515
Gso5g0349 511 PRINTS Leucine-rich repeat signature 258 271 - -
Gso5g0349 511 PRINTS Leucine-rich repeat signature 396 409 - -
Gso5g0349 511 Coils Coil 153 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0349 Gso-Chr5 3669554 3672045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0349 207 435 Receptor kinase-like Gene Family AT1G73080 33.475 3.18e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0349 - - gmx:100782818 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0349 5 3669554 3672045 Gso4g1582 4 45423617 45427222 PCT
Gso4g1582 4 45423617 45427222 Gso5g0349 5 3669554 3672045 PCT