Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1582 ATGGATCCCAACCCCGGAACCTTCCCTCTCCTCTCCTACATCATGTCGCGCCTCCCTTCCCTCACTCCCAGACCCGCCGCCCCGGCACCCTCCGATTCCGACCAATTCGACATCGAACAGCCACCGGAGATTGTGGGCCAAATGCCGCACCTGGCGGACCCGGAGCTGGTGGCCTCTATGGGCCGGGCCGTGGCACAGGTGACGCAGGCCCGCTCGGTCCTCACCCTCATCGGGGAGCGACCCACGCACGAGGAGGTCGACAATGCCCGGGCAAAGTTGGCCGACGTCGAGGCCCAGCTCTCCCGAGAACTGGAAGAGATCGTGCTGCAGGCCCGGCCCGCGGAGATCGAGATCCAGGGGTGGCGGGCCCAGCAGGCCGAGAGGGAGAGGGAGTGCAGGGAGCGGGCCGAGACGGAGAGGCGGGTGTGGAGATCGGTGCTGCAGCTGGACGAGATGCACGAGGCTTACGAGAAGCTTCTGAAGGACGCGGAGAAGCGGTTGGTGAAGATGTACGAGTCCAAAGAAGACGGCGGCGGCGGCGATGCCGACCTGGCTTATGGCGAGGAAGTCAACGAAGAGGTTGTGGGGATTCTGCAGGAGGCTTACGGCAAAGGAATGGAAAGAATTGATCTTTCTGGACGCCAGTTGAAGCTCTTGCCTGAGGCTTTTGGTCGCATTTCTGGCTTGCTCGTTTTTGATCTTTCAACCAATCAACTCTCGGCAATTCCTGATTCAATAGCTGGATTGCAAAACCTTGAGGAGCTTAATCTGTCTTCAAATCTTTTGGAATCATTGCCAGATTCAATTGGGTTGTTACAAAAGTTGAAATTGCTCAATGTCTCTGGAAACAAGCTGACTGCGCTTCCTGATTCCATCTGTCAGTGCAGGTCATTGGTGGAGTTGGATGTAAGCTTTAACAATCTCTCATATTTGCCAACAAACATTGGATATGAATTACCGAACTTGCAGAAACTCATGATTCATTTGAACAAGATTCGATCTTTTCCCTCATCTATCTGTGAGTTGAAGTCCTTGCACTATTTGGATGCTCACTTTAATGAGCTACATGGGCTTCCAATTGCAATTGGGAGACTGACTAATCTTGAAGTTCTCAACCTGAGCAGCAACTTCAGTGACCTCAAAGAACTTCCTGAGACATTTGGTGATTTGGCTAACCTCAGGGAATTGGATCTCAGCAATAATCAGATTCATGCTCTTCCAGACACATTTGGTCGCCTTGATAATTTAATCAAGCTCAACTTGGAGCAAAATCCTCTTGAATTGCCACCAATGGAGATTGTAAATCAAGGGCTTGAAGCCATAAAGACTTTTATGGCCAAGAGGTGGCTTGATATATTGTTGGAGGAAGAAAGGAAAAGCAACCAAGAAATGCAAGAACCAGAACAGGGTGGTTGGTTAACACGAAGCACCTTCTGGTTGAAGAATGTTTCTGGAAATGTAATCGGGTATATTGGAACTACCGTTGGATCTCCCATGTCACCCAAATCTCCCAGAGATGCATATCTTGATCAGCAGCTATGA 1542 0.5091 MDPNPGTFPLLSYIMSRLPSLTPRPAAPAPSDSDQFDIEQPPEIVGQMPHLADPELVASMGRAVAQVTQARSVLTLIGERPTHEEVDNARAKLADVEAQLSRELEEIVLQARPAEIEIQGWRAQQAERERECRERAETERRVWRSVLQLDEMHEAYEKLLKDAEKRLVKMYESKEDGGGGDADLAYGEEVNEEVVGILQEAYGKGMERIDLSGRQLKLLPEAFGRISGLLVFDLSTNQLSAIPDSIAGLQNLEELNLSSNLLESLPDSIGLLQKLKLLNVSGNKLTALPDSICQCRSLVELDVSFNNLSYLPTNIGYELPNLQKLMIHLNKIRSFPSSICELKSLHYLDAHFNELHGLPIAIGRLTNLEVLNLSSNFSDLKELPETFGDLANLRELDLSNNQIHALPDTFGRLDNLIKLNLEQNPLELPPMEIVNQGLEAIKTFMAKRWLDILLEEERKSNQEMQEPEQGGWLTRSTFWLKNVSGNVIGYIGTTVGSPMSPKSPRDAYLDQQL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1582 513 ProSiteProfiles Leucine-rich repeat profile. 251 272 IPR001611 GO:0005515
Gso4g1582 513 PANTHER LEUCINE-RICH REPEAT-CONTAINING 24 494 - -
Gso4g1582 513 PRINTS Leucine-rich repeat signature 252 265 - -
Gso4g1582 513 PRINTS Leucine-rich repeat signature 390 403 - -
Gso4g1582 513 Coils Coil 146 173 - -
Gso4g1582 513 Gene3D Ribonuclease Inhibitor 102 321 IPR032675 -
Gso4g1582 513 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 24 494 - -
Gso4g1582 513 SUPERFAMILY L domain-like 206 426 - -
Gso4g1582 513 SMART LRR_bac_2 272 291 - -
Gso4g1582 513 SMART LRR_bac_2 365 386 - -
Gso4g1582 513 SMART LRR_bac_2 319 338 - -
Gso4g1582 513 SMART LRR_bac_2 295 314 - -
Gso4g1582 513 SMART LRR_bac_2 249 268 - -
Gso4g1582 513 SMART LRR_bac_2 390 409 - -
Gso4g1582 513 SMART LRR_bac_2 342 361 - -
Gso4g1582 513 Coils Coil 86 106 - -
Gso4g1582 513 ProSiteProfiles Leucine-rich repeat profile. 392 413 IPR001611 GO:0005515
Gso4g1582 513 SMART LRR_typ_2 249 271 IPR003591 -
Gso4g1582 513 SMART LRR_typ_2 319 342 IPR003591 -
Gso4g1582 513 SMART LRR_typ_2 272 295 IPR003591 -
Gso4g1582 513 SMART LRR_typ_2 390 413 IPR003591 -
Gso4g1582 513 SMART LRR_typ_2 296 318 IPR003591 -
Gso4g1582 513 SMART LRR_typ_2 226 248 IPR003591 -
Gso4g1582 513 SMART LRR_typ_2 365 389 IPR003591 -
Gso4g1582 513 Gene3D Ribonuclease Inhibitor 322 448 IPR032675 -
Gso4g1582 513 Pfam Leucine rich repeat 367 426 IPR001611 GO:0005515
Gso4g1582 513 Pfam Leucine rich repeat 251 308 IPR001611 GO:0005515
Gso4g1582 513 ProSiteProfiles Leucine-rich repeat profile. 274 295 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1582 Gso-Chr4 45423617 45427222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1582 219 449 Receptor kinase-like Gene Family AT4G08850 32.773 8.30e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1582 - - gmx:100803823 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0349 5 3669554 3672045 Gso4g1582 4 45423617 45427222 PCT
Gso4g1582 4 45423617 45427222 Gso5g0349 5 3669554 3672045 PCT