Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0337 ATGAAGGCAACACTTCGATACTTAGCAGGCCTTGCTGGGCCAAGTGGTTTCGGCTCAAATTCAACAGCTGAGCAAGTCACTGAAGATTGCTGTTCCTTGCTCCCTTCAAATCTAACCGCTCTCATCACTGGTGCGACTTCTGGTATTGGAGCTGAAACAGCTAGAGTGTTAGCAAAGAGAGGAGTGAGGGTTGTGATTGGTGCCAGGGACTTGAGAAAGGCCAAGGAAGTGAGAGAGAAAATCCAAAAGGAGAGTCCTCATGCTGAGGTTATTCTGTTGGAGATTGATCTTAGCTCTTTTGCTTCTGTACAGAGATTTTGTTCAGAGTTTTTAGCTTTGGAACTGCCCCTTAATATTCTCATAAACAATGCAGGAATGTACTCTCAAAACTTGGAGTTCTCCGAAGAGAAAATTGAAATGACATTTGCTACAAATTACTTAGGACATTTTTTGCTAACGAAAATGCTACTAGAGAAAATAATAGATACAGCAAAGAAGACAGGCATTCAAGGAAGAATTATAAACGTTTCTTCTGTGATTCATAGCTGGGTGAAAAGATCTTGTTTTTCTTTCAACGACATGCTCTGTGGAAAAAATTACAATGGCACACGCGCATATGCTCAGTCAAAATTGGCCACAATTCTGCATGTGAAGGAGGTAGCCAGACAGCTGAAGGAAAGGAATGCAAATGTAACTATTAATGCAGTGCATCCAGGCATTGTGAAGACGGGAATTATTAGAGCACATAAGGGCTTAATAACGGATTCCCTTTTTTTCATTGCGTCGAAGCTACTGAAATCGATATCACAGGGTGCATCAACGACGTGTTATGTTGCTCTAAGCGGACAAACAGATGGAATGAGTGGGAAATATTTTACAGATTGTAACGAGAGTAACTGCTCAAGTCTAGCAAATGACGAATCAGAAGCCAGAAAGCTATGGAACGACACCCATGCCTTGCTTCACAAACGGCTACGTCAAGCAACAAATTGA 993 0.4169 MKATLRYLAGLAGPSGFGSNSTAEQVTEDCCSLLPSNLTALITGATSGIGAETARVLAKRGVRVVIGARDLRKAKEVREKIQKESPHAEVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGMYSQNLEFSEEKIEMTFATNYLGHFLLTKMLLEKIIDTAKKTGIQGRIINVSSVIHSWVKRSCFSFNDMLCGKNYNGTRAYAQSKLATILHVKEVARQLKERNANVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSGQTDGMSGKYFTDCNESNCSSLANDESEARKLWNDTHALLHKRLRQATN* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0337 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 298 IPR036291 -
Gso5g0337 330 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 326 - -
Gso5g0337 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Gso5g0337 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Gso5g0337 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Gso5g0337 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Gso5g0337 330 PANTHER RETINOL DEHYDROGENASE 4 326 - -
Gso5g0337 330 Gene3D - 35 326 - -
Gso5g0337 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Gso5g0337 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Gso5g0337 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Gso5g0337 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Gso5g0337 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Gso5g0337 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0337 Gso-Chr5 3510213 3513661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0337 19 248 Acyl Lipid Metabolism Gene Families AT1G63380 28.333 2.55e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0337 - - gmx:100776567 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0337 5 3510213 3513661 Gso17g0730 17 6717225 6720830 GST
Gso5g0337 5 3510213 3513661 Gso4g1568 4 45175665 45179828 PCT
Gso5g0337 5 3510213 3513661 Gso6g1513 6 15336990 15340996 PCT
Gso4g1568 4 45175665 45179828 Gso5g0337 5 3510213 3513661 PCT
Gso6g1513 6 15336990 15340996 Gso5g0337 5 3510213 3513661 PCT