Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1568 ATGTGTTTGCATAGTCTAACCTTCAAATGTCATTTGTCCTTGCAACACTCTAAAGCCATGAAGGCAACACTAAGATACTTAGCAGGAATGGCAGGCCCTAGTGGTTTTGGCTCAAATTCAACAGCTGAACAAGTCACTGAAGATTGTTCTTCCTTCCTTCCTTCTGCAGCTCTAACCGCTCTCATCACTGGGGCGAGTTCTGGTATTGGAGCTGAAACAGCAAGAGTGTTAGCAAAGAGAGGAGTGAGAGTTGTGATTGCTGCAAGGGACTTGAAGAAGGCCAGGGAAGTGAAAAAGAACATACAAAAGGAGACTCCAAAAGCTGAGGTTATTCTGTTGGAGATTGATCTTGGCTCTTTTGGTTCTGTGCAGAGATTTTGTTCCGAGTTTTTGGCTTTAGAACTTCCCCTTAATATTCTCATAAACAATGCAGGGATGTTTTCTCAAAACTTGGAGTTCTCTGAGGATAAAATTGAGATGACATTTGCTACAAATTACCTAGGTCATTTCTTGTTAACAGAAATATTATTAGACAAAATGATAGAGACGGCAGAGAAGACATGTATTCAAGGAAGAATAATAAACGTTTCTTCTGTCATACATAGCTGGGAGAAAAAAGATGGTTTTCGTTTCAACGACATACTCAGTGGAAAAAAATATAATGGCACACGTGCTTATGCTCAGTCCAAATTGGCAAATATTTTGCATGCAAAGGAAATAGCCAAGCAACTCAAGGCAAGGAATGCAAGAGTAACTATCAATGCAGTGCACCCAGGCATTGTGAAGACAGGAATTATTAGAGCTCATAAGGGCTTAATAACGGATTCCCTATTTTTTATTGCATCAAAGTTACTCAAAACGACATCACAGGGTGCATCAACTACGTGTTATGTAGCACTGAGCCCCAAAACAGAAGGGATAAGTGGAAAATACTTTGCAGATTGCAATGAGTGTAAATGCTCGAGCCTAGCAAATGACGAATCGGAAGCTCAAAAGCTATGGAACAACACACATGCCTTGCTTCACAAACGACTGCGTCAAGCAACGATTTGA 1053 0.4055 MCLHSLTFKCHLSLQHSKAMKATLRYLAGMAGPSGFGSNSTAEQVTEDCSSFLPSAALTALITGASSGIGAETARVLAKRGVRVVIAARDLKKAREVKKNIQKETPKAEVILLEIDLGSFGSVQRFCSEFLALELPLNILINNAGMFSQNLEFSEDKIEMTFATNYLGHFLLTEILLDKMIETAEKTCIQGRIINVSSVIHSWEKKDGFRFNDILSGKKYNGTRAYAQSKLANILHAKEIAKQLKARNARVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKTTSQGASTTCYVALSPKTEGISGKYFADCNECKCSSLANDESEAQKLWNNTHALLHKRLRQATI* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1568 350 Pfam short chain dehydrogenase 59 200 IPR002347 -
Gso4g1568 350 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 23 346 - -
Gso4g1568 350 Gene3D - 55 346 - -
Gso4g1568 350 Coils Coil 84 104 - -
Gso4g1568 350 PRINTS Glucose/ribitol dehydrogenase family signature 59 76 IPR002347 -
Gso4g1568 350 PRINTS Glucose/ribitol dehydrogenase family signature 135 146 IPR002347 -
Gso4g1568 350 PRINTS Glucose/ribitol dehydrogenase family signature 185 201 IPR002347 -
Gso4g1568 350 PRINTS Glucose/ribitol dehydrogenase family signature 226 245 IPR002347 -
Gso4g1568 350 PRINTS Glucose/ribitol dehydrogenase family signature 249 266 IPR002347 -
Gso4g1568 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 59 319 IPR036291 -
Gso4g1568 350 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 146 IPR002347 -
Gso4g1568 350 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 191 199 IPR002347 -
Gso4g1568 350 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 226 245 IPR002347 -
Gso4g1568 350 PANTHER RETINOL DEHYDROGENASE 23 346 - -
Gso4g1568 350 CDD retinol-DH_like_SDR_c_like 59 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1568 Gso-Chr4 45175665 45179828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1568 59 314 Acyl Lipid Metabolism Gene Families AT3G46170 26.866 1.03e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1568 - - gmx:100799729 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1568 4 45175665 45179828 Gso6g1513 6 15336990 15340996 GST
Gso5g0337 5 3510213 3513661 Gso4g1568 4 45175665 45179828 PCT
Gso17g0730 17 6717225 6720830 Gso4g1568 4 45175665 45179828 PCT
Gso4g1568 4 45175665 45179828 Gso5g0337 5 3510213 3513661 PCT
Gso4g1568 4 45175665 45179828 Gso17g0730 17 6717225 6720830 PCT