Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0312 ATGCCAGAGATCGTTACAAATGGAGTTAATGATGAAAGAAGAGTAAATGAAATGAATGAGATTGGGAACATTTCACCCTTGAGGGAAACCCCAAGTCCAATCAAGAACCTGAGGAGTTCCTTGAGTCCACAAAGAAGACAAAGTGTTGGTCCAAATTTTCCTGTTAATAGGGTGATTGACACTTCCTCAATTGATAGGCTTCATGGAAATGTTTGTGACAAGCAAAGTTCTAGTCAATCACCCTCAAGACAAAGTTTTGGATCCGATGGCAATGAGTCAAAAACCGATTCAGAATTGCACAATCTAGTGAAAGAGGGAGTAAAGAAAAAGACAAAAGGGGATTCTAGAAGTGAAGCATCTTCCAAAATGGGCAGTTTGTCAAATGATAAGAAGTTGGATAGGATTCGGCCAGCAACTGCAAGTGGTGTTGTTTCACAAAAACTAAAGAAAGCATCACAATCACAGTTGGCCCTTGAATTTCCATCAAGATCAAGACCAAAGGGAAAAAGCCCTCCTCCAAAACCTCCTGTTGATAGGAAGAATGATAATAACCCTTTGGGGAAACAAAATACAAGAGTTATCCGCGTGAAAAAAACTGTTGGTGGAAGATCACTGTCACAAAGTCACATTGAGAATTTCACTGGATCAGCATTGGATAGGCCTGATCTGGGACTAGCTTTACTAAACCAAGCAAGGAACATGATTTCATCGGGAGATAATCCGATGAAAGCTCTTGAATTATCTCTTCAAGCAATGAAATTGTTTGAGAGAGCTGCTGCTTATGGGAAACCAAGTTTGGATTTGGCCATGTGTTTACATGTTACTGCAGCAATATATTGCAGTTTGGGACATTTCAGTGAAGCGATTCCAATTATAGAGCGCTCAATTGAGATTCCCACTATTGAGGAAGACCACCAACACGCCATTGCTAAATTTGCCGGTCACATGCATCTAGGAGACATATATGCCATGTTAGGCCATCTTGAGAAATCAATTAAGTGCTACACTGAAGGGTTGAAAGTACAAAGGAAGGCTTTGGGAGAAACAGATCCAAAAGTTGGTGAAACTTGCCGGTATGTGGCTGAGGCTAACTTTCAAGCATTGCAATTTGATGAAGCAGAGAGGCTGTGCCAAATTGCCCTTGACATTCATAGAGCAAATGGTTCACCCTCATCTCTTGAAGAGGCAGCTGATAGGAGGCTAATGGGACTTATATGTGAAGCAAATGGAAAACATGAAGCAGCCTTGGAGCATCTTGTTTTGGCCAGCATGGCAATGGTAGCAAATGGCCAACATGTGGAAGTAGCATCTGTTGATTGCAACATTGGAGACACATACTTATCCTTGGCTAGATATGATGAGGCCATCTTTGCATATCAGAGAGCATTGGCAGTTTACAGGACTCACAAAGGTGAGAATCATCCTTCTGTGGGATCAGTCTTTGTACGCCTTGCTGACTTGTATTGCAGGACATGGAAGATAAGGGAATCAAAATCATATTGTGAGAGTGCACTTAAAATCTATGAGAATCCCATGCCTGGGGTCCCTCCAGAGGAGGTTGCTAGTGGTTTTATGAATGTCTCAGCCATTTATGAGTCAATGAATGAGCTAGAACAGGCACTTAAGTTACTTCACAAGGCACTAGAGATACTTAATGAAGCCTCTGGTCAGCAAAACACAATAGCTGGTATTGAAGCTCAGATGGGAGTCATGTACTACGTGTTGGAGAACTACACTGAATCTTACAATACTTTCAAGAATGCTGTGTCGAAGCTTCGTGCTACTGGGGAGAAGAAATCTGCATTCTTTGGTACTGTTCTTAATCAAATGGGACTTGCTTGTGTGCAGCTTCATGCCTTAGATGAGGCTGTCGAATTATTTGAAGAAGCGAGGGTCATTCTGGAACAAGAGAATGGACCTTATCACCCTGAAACACTTGGAGTATATGGCAATCTTGCTGGCACGTATGATGCAATTGGAAGGTTGGATGAAGCAATTGAAATTCTTGAAAACATTGTGGTAATGAGGGAGGAAAAGCTTGGGACAGCAAATCCTGATGTTGTTGATGAGAAGAGAAGGTTGGACGAGTTGTTGAAGGAAACAGGCAGAGTTCGGAACAGAAAAACCAAGTCACTCGAGATCCTTTTTGACGCCAATCCTCGTACTATAAAAAACCTTGTCGTTGAGGCCTGA 2193 0.42 MPEIVTNGVNDERRVNEMNEIGNISPLRETPSPIKNLRSSLSPQRRQSVGPNFPVNRVIDTSSIDRLHGNVCDKQSSSQSPSRQSFGSDGNESKTDSELHNLVKEGVKKKTKGDSRSEASSKMGSLSNDKKLDRIRPATASGVVSQKLKKASQSQLALEFPSRSRPKGKSPPPKPPVDRKNDNNPLGKQNTRVIRVKKTVGGRSLSQSHIENFTGSALDRPDLGLALLNQARNMISSGDNPMKALELSLQAMKLFERAAAYGKPSLDLAMCLHVTAAIYCSLGHFSEAIPIIERSIEIPTIEEDHQHAIAKFAGHMHLGDIYAMLGHLEKSIKCYTEGLKVQRKALGETDPKVGETCRYVAEANFQALQFDEAERLCQIALDIHRANGSPSSLEEAADRRLMGLICEANGKHEAALEHLVLASMAMVANGQHVEVASVDCNIGDTYLSLARYDEAIFAYQRALAVYRTHKGENHPSVGSVFVRLADLYCRTWKIRESKSYCESALKIYENPMPGVPPEEVASGFMNVSAIYESMNELEQALKLLHKALEILNEASGQQNTIAGIEAQMGVMYYVLENYTESYNTFKNAVSKLRATGEKKSAFFGTVLNQMGLACVQLHALDEAVELFEEARVILEQENGPYHPETLGVYGNLAGTYDAIGRLDEAIEILENIVVMREEKLGTANPDVVDEKRRLDELLKETGRVRNRKTKSLEILFDANPRTIKNLVVEA* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0312 730 ProSiteProfiles TPR repeat profile. 436 469 IPR019734 GO:0005515
Gso5g0312 730 ProSiteProfiles TPR repeat profile. 521 554 IPR019734 GO:0005515
Gso5g0312 730 SUPERFAMILY TPR-like 564 703 IPR011990 GO:0005515
Gso5g0312 730 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 719 - -
Gso5g0312 730 SUPERFAMILY TPR-like 314 419 IPR011990 GO:0005515
Gso5g0312 730 SMART tpr_5 269 302 IPR019734 GO:0005515
Gso5g0312 730 SMART tpr_5 396 429 IPR019734 GO:0005515
Gso5g0312 730 SMART tpr_5 562 595 IPR019734 GO:0005515
Gso5g0312 730 SMART tpr_5 478 511 IPR019734 GO:0005515
Gso5g0312 730 SMART tpr_5 521 554 IPR019734 GO:0005515
Gso5g0312 730 SMART tpr_5 436 469 IPR019734 GO:0005515
Gso5g0312 730 SMART tpr_5 604 637 IPR019734 GO:0005515
Gso5g0312 730 SMART tpr_5 312 345 IPR019734 GO:0005515
Gso5g0312 730 SMART tpr_5 354 387 IPR019734 GO:0005515
Gso5g0312 730 SMART tpr_5 646 679 IPR019734 GO:0005515
Gso5g0312 730 MobiDBLite consensus disorder prediction 93 117 - -
Gso5g0312 730 Coils Coil 617 637 - -
Gso5g0312 730 MobiDBLite consensus disorder prediction 68 92 - -
Gso5g0312 730 MobiDBLite consensus disorder prediction 145 160 - -
Gso5g0312 730 Gene3D Tetratricopeptide repeat domain 423 604 IPR011990 GO:0005515
Gso5g0312 730 Coils Coil 534 554 - -
Gso5g0312 730 MobiDBLite consensus disorder prediction 1 191 - -
Gso5g0312 730 MobiDBLite consensus disorder prediction 23 59 - -
Gso5g0312 730 SUPERFAMILY TPR-like 221 342 IPR011990 GO:0005515
Gso5g0312 730 PANTHER KINESIN LIGHT CHAIN 1 719 - -
Gso5g0312 730 Gene3D Tetratricopeptide repeat domain 206 422 IPR011990 GO:0005515
Gso5g0312 730 Pfam MalT-like TPR region 272 434 IPR041617 -
Gso5g0312 730 Pfam Tetratricopeptide repeat 435 510 - -
Gso5g0312 730 Pfam Tetratricopeptide repeat 605 670 - -
Gso5g0312 730 Gene3D Tetratricopeptide repeat domain 605 710 IPR011990 GO:0005515
Gso5g0312 730 SUPERFAMILY TPR-like 431 551 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0312 Gso-Chr5 3254510 3257693 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0312 - - gmx:100813461 1390.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0312 5 3254510 3257693 Gso6g1535 6 15768138 15772400 PCT
Gso6g1535 6 15768138 15772400 Gso5g0312 5 3254510 3257693 PCT