Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0176 ATGGAACGTGAAAACGACAACAGCGCCAAAAGCAGTGTCAACGGTCAGCGCCGCGTGGGTTTACTCTACGACGAGAGGATGTGCAAGCACCACACACCAGACGACGAGGACCATCCCGAGACCCCCAATCGCATCAGAGCTATTTGGAACAAACTCCAAAGCACCGGCGTTCCCCAACGATGCGTGATTTTGGAGGCCAAAGAAGCTGAGGACAAACATCTACTGTTAGTGCATTCTGAAAATCATGTTAATCTGATTAAGAACATCAGCTCAAAGCAGTTCAATTCGCGGAGGCATAAGATTGCCTCAAAATTGGATTCCATATATTTTAATGAAGGTTCATCGGAAGCTGCGTACCTTGCTGCTGGCTCTGCAGTAGAGGTTGTTGAAAGAGTGGCAAGCAGGGAATTGGATTCTGCTGTTGCCATTGTTAGGCCTCCAGGTCATCATGCAGAACAAAATGAAGCTATGGGATTCTGTCTGTTCAACAATGTGGCAGTTGCTGCAAGATATCTCTTAGATGAAAGACCAGAATTAGGTGTGAAGAAAATATTAATTGTTGATTGGGATGTCCATCATGGAAATGGTACTCAGAAAATGTTCTGGAATGATTCTCGAGTTTTATTCTTTTCCGTTCACAGGCATGAGTTTGGGAGTTTTTATCCAGCTAATGATGATGGATTTTATACCATGATTGGAGAAGGAGCAGGTGCTGGATATAATATAAATGTCCCCTGGGAGAATGGGCGATGTGGTGATGCAGATTACTTTGCAGTGTGGGACCACATCTTGCTTCCTGTTGCTAAAGAATTTAATCCAGACATAATTATAGTTTCTGCTGGATTTGATGCAGCTGTTGGTGACCCTCTGGGAGGATGCCGTGTCACACCATTTGGTTATTCTGTTCTGTTAGAGAAGTTGATGAATTTTGCTGAAGGTAGGATTGTACTGATTTTAGAAGGAGGATATAACCTTGATTCCATCGCAAAATCAATGCATGCCTGCTTGGAAGTTTTGCTAGAGGACAAGCCTGTTATTGGATCCTCAGAGGCCTATCCATTTGAATCTACGTGGCGTGTGATTAAAGCGGTTCTCCTGGAGTTAAGTCCCTTTTGGCCTACACTTGCATGTGAATTACCGCAAAAGTTAATCTCACAAATGGCACCACCTCCGCATACTCTTGTCTCAAGCTCTGACTCTGAGGCTGAGGATGATAAGGGTGCACCAAGTTCAGAAAATTTTGTTGAACTTCTTGAGGATGTCATAAAACCACTTTCCAAACTGAAAGTTGATGCTGATGAAGATACTGATGTTTCTAGTACTTGGCGATCTGAATTGTCAAATGTTTATATATGGTATGCCTCATATGGATCAAATATGTGGAAGGCAAGATTAAATTGCTACCTAGCAGGTGGACAGGTGGAAGGTATGCAGAAGGGGTGTTCTGGTTCAGTGAATAGAACTCTGCCAAAAGAGATCCTGTGGAAGACTTTCCCTTGTCATATATTTTTTGGTCGTGATTCATCACATTCATGGGGTATGGGAGGCGTTGCATTTCTTAATCCTGAGAAAAGTTTTCAGCACAACACCTATATGTGCCTGTACAAAATTTCGCTAGAGCAGTTCAATGATATTTTGTTTCAGGAAAATGGTTTAAGCCTTGATGCGGGCTCTCCTTTATTTGATATAACTACTCTGAATGCTATCTCTTACAAGGAGTTCCACTCTCTGGAGGTTGTCAAGGGTGCTTGGTATGGCAATGTTGTCTACTTAGGAAAGGAGCTGGATATTCCAGTAATTACCATGACGTGTTCTCTTCTTGATATTGAACGTTTCAAATCTGGGAAGCTACCATTGCGTGCCCCTAATAAAGCGTATGCAAACACCTTAATAAAAGGGTTGGTAGATGGAGAACAGCTTTCAGAGGTGGAAGCCATCGCTTACATAGAAGGTGCTGCTAAATCATTGTAG 1971 0.4277 MERENDNSAKSSVNGQRRVGLLYDERMCKHHTPDDEDHPETPNRIRAIWNKLQSTGVPQRCVILEAKEAEDKHLLLVHSENHVNLIKNISSKQFNSRRHKIASKLDSIYFNEGSSEAAYLAAGSAVEVVERVASRELDSAVAIVRPPGHHAEQNEAMGFCLFNNVAVAARYLLDERPELGVKKILIVDWDVHHGNGTQKMFWNDSRVLFFSVHRHEFGSFYPANDDGFYTMIGEGAGAGYNINVPWENGRCGDADYFAVWDHILLPVAKEFNPDIIIVSAGFDAAVGDPLGGCRVTPFGYSVLLEKLMNFAEGRIVLILEGGYNLDSIAKSMHACLEVLLEDKPVIGSSEAYPFESTWRVIKAVLLELSPFWPTLACELPQKLISQMAPPPHTLVSSSDSEAEDDKGAPSSENFVELLEDVIKPLSKLKVDADEDTDVSSTWRSELSNVYIWYASYGSNMWKARLNCYLAGGQVEGMQKGCSGSVNRTLPKEILWKTFPCHIFFGRDSSHSWGMGGVAFLNPEKSFQHNTYMCLYKISLEQFNDILFQENGLSLDAGSPLFDITTLNAISYKEFHSLEVVKGAWYGNVVYLGKELDIPVITMTCSLLDIERFKSGKLPLRAPNKAYANTLIKGLVDGEQLSEVEAIAYIEGAAKSL* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0176 656 PRINTS Histone deacetylase superfamily signature 146 169 IPR000286 -
Gso5g0176 656 PRINTS Histone deacetylase superfamily signature 273 283 IPR000286 -
Gso5g0176 656 Gene3D - 439 654 - -
Gso5g0176 656 MobiDBLite consensus disorder prediction 390 409 - -
Gso5g0176 656 PANTHER BNAA09G05590D PROTEIN 11 611 - -
Gso5g0176 656 Pfam Histone deacetylase domain 38 338 IPR023801 -
Gso5g0176 656 PANTHER HISTONE DEACETYLASE 11 611 - -
Gso5g0176 656 Gene3D Histone deacetylase domain 11 389 IPR037138 -
Gso5g0176 656 SUPERFAMILY Arginase/deacetylase 17 346 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0176 Gso-Chr5 1888998 1895507 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0176 K11406 - gmx:100788831 1330.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0176 5 1888998 1895507 Gso17g0659 17 6103309 6109699 GST
Gso5g0176 5 1888998 1895507 Gso4g1416 4 41741503 41743351 PCT
Gso5g0176 5 1888998 1895507 Gso6g1636 6 17335922 17337677 PCT