Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1836 ATGATGTCGTGGGCGTGTCGTTCGGAAGAGTCAGAGAGCCCCAACAACCTAATCCCGTACCTCCCAAACGACGTCGCATTGAACTGCCTAGCACGCATCCCTCGTTCCCACCACCCAACCCTCTCGCTTGTGTCGAAACCAATCCGAAGCCTCCTCTATTCCCCTCTCTTGTTCACCACGCGCTCCCTCCTCCAATGCACCCAACCCCTCCTCTACCTCACTCTCCGCTCACGCGATTCCTCCCTCCAGTGGTTCACGCTCCACCGCACAAACCCTAACCCCCTCCTTGCTCCTCTTCCTCCCATCCCCTCCCCCGCCGTTGGCTCCGCCTACGCCGTCCTTGGCCCCACCATCTACGTCCTCGGCGGCTCCATCCAAGACGTCCCCTCCTCCCACGTCTGGCTCCTCGACTGCCGCTTCCACCGCTGGCTCCGTGGTCCCCCCATGCGCGTCGCCCGCGAGTTCGCCGCCGCCGGCGTCCTCCACGGCAAGATCTACGTCCTCGGAGGCTGCGTCGCCGACACCTGGTCCCGCTCCGCCAACTGGGCAGAGGTCCTTGACCCCGCCTCGGGCCGGTGGGAGAGGGTCGCCAGTCCGACGGAGGTCCGGGAGAAGTGGATGCACGCCAGCGCCGTCGTCGGGGACCGAATCTACGCGATGGCGGACCGCGGCGGCATCGCTTTCGAGCCACGCAGCTGCGCGTGGGAGAGCGTGGGGGGAGAATTGGACCACGGGTGGAGGGGGAGGGCGTGCGTGGTGGAGGGAATCTTATACTGCTACGACTACTTGGGGAAAATCAAAGGGTTCGATGTGGGGCGCGGGGTGTGGGAGGAGCTGAAGGGGTTGGAGAATGCTTTGCCGAGGTTTTTGTGTGGGGCCACCATGGCTGATTTGGGTGGGAAACTGTGCGTGGTTTGGGAGTGCCAATGCAATGGGAAGGAGATGGAGATTTGGTGCGCGGAGATTGGGGTGAAGAAGAATTCGGATGGGGAATTGTGGGGTCAACTTGGTTGGTTTGGGAAGGTTCTTTCTGTTCCCAAAGGCTCTTCTATTGTCAACTGTTCTTCTGTTTCCTTGTGA 1080 0.6185 MMSWACRSEESESPNNLIPYLPNDVALNCLARIPRSHHPTLSLVSKPIRSLLYSPLLFTTRSLLQCTQPLLYLTLRSRDSSLQWFTLHRTNPNPLLAPLPPIPSPAVGSAYAVLGPTIYVLGGSIQDVPSSHVWLLDCRFHRWLRGPPMRVAREFAAAGVLHGKIYVLGGCVADTWSRSANWAEVLDPASGRWERVASPTEVREKWMHASAVVGDRIYAMADRGGIAFEPRSCAWESVGGELDHGWRGRACVVEGILYCYDYLGKIKGFDVGRGVWEELKGLENALPRFLCGATMADLGGKLCVVWECQCNGKEMEIWCAEIGVKKNSDGELWGQLGWFGKVLSVPKGSSIVNCSSVSL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1836 359 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP6 8 342 - -
Gso4g1836 359 SUPERFAMILY F-box domain 11 101 IPR036047 GO:0005515
Gso4g1836 359 SUPERFAMILY Kelch motif 77 339 IPR015915 GO:0005515
Gso4g1836 359 Gene3D - 63 330 IPR015915 GO:0005515
Gso4g1836 359 Pfam Kelch motif 153 199 IPR006652 GO:0005515
Gso4g1836 359 Pfam Kelch motif 106 150 IPR006652 GO:0005515
Gso4g1836 359 SMART kelc_smart 117 163 IPR006652 GO:0005515
Gso4g1836 359 SMART kelc_smart 164 216 IPR006652 GO:0005515
Gso4g1836 359 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 8 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1836 Gso-Chr4 48619261 48621508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1836 21 343 Miscellaneous Gene Families AT4G33900 36.752 2.25e-59 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1836 - - gmx:100798508 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1836 4 48619261 48621508 Gso6g1235 6 12025769 12027269 GST