Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1666 ATGGCGGCAATCAGCATCATCGGTTCACATTTTCCAGGGAATTTAAGCGATGCAAAGAAGGATAATAATGTTTTGAGGCTTAGTTTTTGTTCTCCACGCAACACTACTAACATGTCTAATAACAAACGAAGATTTTTATCGGTGAGTGCAAGTTACAATGACAGTCCTCGAAAAATGGACACAACAAATAGAGTGAATGTGAATGGAATAAACGTGGCAGAGGCTCCTCTACAAGCAGGGAAATTGGCAAATGAAAGTGCAGCAGATGAAGCTATTGTTACCAGCTTGCGTGGAAGGTTTGTGGAGGGTAAGTTTGTATTTAGGCAAATTTTTGTTATCAGGTCTTATGAAATTGGACCAGATAAAACTGCCACAATGGAGACAATCATGAATTTTCTTCAGGAAACTGCTTTGAATCATGTCACCAGCTCCGGGATTGGTGGAGAAGGATTTGGAGCAACCCGCGAGATGAGCCTTAGAAAACTCATTTGGGTGGTTACTCGTATTCAAGTTCAAGTGCAAAGATATAACAAATGGGGAGACGAAATTGAAGTTGATACTTGGGTTGATGCAGCAGGAAAGAATGGAATGCGAAGAGATTGGATAATCAGGGATCATTACACCAAAGAAATCATAACAAGAGCAACAAGCACATGGGTGATCATGAATAGACAAACAAGAAGACTATCCAAGATCCCTGAAGAGGTTAAGCAAGAGCTTCTTCCTTTTTACCTTAATAACAGGCTTGCCGTTCCTACCGAAGAAGCAGATTCTGAAAAGATAGACAAACTCACTGATGAAACTGCTCAGAGAATCCGATCTGGCCTGGCTCCAAGGTGGAATGACATGGATGCCAACCAGCATGTCAACAATGTGAAATACATTGGATGGATTTTAGAGAGTGTGCCAATTGAAGTGCTAGAACATTATAATATGACAAGCATGACTTTGGAGTTTCGGCGTGAATGTACACAATCAAATTTGTTGGAGTCCATGACATGTCCAACAGCAAGAGTTATGGAGTCCAATAATAATTCCAAGAACAGAAAACCCGAACTGCAATACACACACTTGCTTCGTCTGCAACAATATAAAGCAGATGTTATCCGAGCCAGAACTGAATGGAATTTAAAGCAAAAGCAACAGTGA 1149 0.4064 MAAISIIGSHFPGNLSDAKKDNNVLRLSFCSPRNTTNMSNNKRRFLSVSASYNDSPRKMDTTNRVNVNGINVAEAPLQAGKLANESAADEAIVTSLRGRFVEGKFVFRQIFVIRSYEIGPDKTATMETIMNFLQETALNHVTSSGIGGEGFGATREMSLRKLIWVVTRIQVQVQRYNKWGDEIEVDTWVDAAGKNGMRRDWIIRDHYTKEIITRATSTWVIMNRQTRRLSKIPEEVKQELLPFYLNNRLAVPTEEADSEKIDKLTDETAQRIRSGLAPRWNDMDANQHVNNVKYIGWILESVPIEVLEHYNMTSMTLEFRRECTQSNLLESMTCPTARVMESNNNSKNRKPELQYTHLLRLQQYKADVIRARTEWNLKQKQQ* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1666 382 CDD 4HBT 107 223 - -
Gso4g1666 382 Pfam Acyl-ACP thioesterase 106 376 IPR002864 GO:0006633|GO:0016790
Gso4g1666 382 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 14 381 IPR045023 GO:0006633|GO:0016297
Gso4g1666 382 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 104 248 IPR029069 -
Gso4g1666 382 Gene3D Hotdog Thioesterase 98 381 - -
Gso4g1666 382 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 14 381 - -
Gso4g1666 382 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 263 337 IPR029069 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1666 Gso-Chr4 46543182 46545839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1666 98 378 Acyl Lipid Metabolism Gene Families AT1G08510 56.228 8.14e-110 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1666 K10781 - gmx:100791281 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1666 4 46543182 46545839 Gso6g1419 6 14108821 14111846 GST