Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1607 ATGGCAATGAAGAAGCTCTTGTGGGTTGTCCTGTCTCTGTCTTTGGTTCTTGGAGTGGCCAATAGCTTTGATTTTCACGACAAGGATTTGGCGTCCGAGGAAAGCTTTTGGGACTTGTACGAGAGATGGAGGAGTCACCACACGGTTTCGCGAAGCCTCGGTGACAAGCACAAGCGGTTTAACGTGTTTAAAGCAAATGTGATGCATGTCCATAACACTAACAAGATGGATAAGCCTTACAAGCTGAAACTAAACAAGTTTGCTGACATGACCAACCATGAATTTAGGAGTACCTATGCTGGCTCAAAGGTTAATCACCACAGAATGTTCCAAGGCACGCCACGTGGGAACGGGACCTTCATGTATGAGAAGGTTGGTAGTGTTCCTCCTTCTGTGGATTGGAGGAAGAATGGTGCTGTCACTGGTGTAAAAGATCAAGGCCAATGTGGTAGTTGTTGGGCGTTTTCAACTGTTGTAGCTGTTGAAGGCATTAACCAAATCAAGACAAATAAGCTAGTCTCCTTGTCTGAACAAGAGCTGGTGGACTGTGACACCAAAAAAAATGCAGGATGCAATGGTGGGTTAATGGAATCTGCTTTTGAGTTCATCAAGCAGAAGGGAGGCATAACAACAGAAAGCAATTACCCTTACACAGCACAAGATGGAACCTGCGATGCATCAAAGGCAAATGACCTAGCTGTATCAATTGATGGCCATGAGAATGTCCCTGCTAACGACGAAAATGCATTGCTCAAAGCTGTTGCCAACCAACCTGTCTCTGTAGCCATAGATGCTGGGGGATCTGATTTTCAATTCTACTCTGAGGGAGTATTTACTGGTGATTGTAGCACGGAGCTAAATCACGGTGTAGCGATTGTAGGGTATGGAACAACTGTTGATGGGACTGATTACTGGACAGTGAGGAACTCTTGGGGACCAGAATGGGGAGAACAGGGTTACATCAGAATGCAAAGGAGCATATCTAAGAAGGAGGGACTTTGCGGCATAGCTATGATGGCTTCCTACCCAATCAAAAACTCCTCCAATAATCCAACAGGACCCTCATCATCTCCTAAAGATGAACTTTGA 1089 0.4527 MAMKKLLWVVLSLSLVLGVANSFDFHDKDLASEESFWDLYERWRSHHTVSRSLGDKHKRFNVFKANVMHVHNTNKMDKPYKLKLNKFADMTNHEFRSTYAGSKVNHHRMFQGTPRGNGTFMYEKVGSVPPSVDWRKNGAVTGVKDQGQCGSCWAFSTVVAVEGINQIKTNKLVSLSEQELVDCDTKKNAGCNGGLMESAFEFIKQKGGITTESNYPYTAQDGTCDASKANDLAVSIDGHENVPANDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGDCSTELNHGVAIVGYGTTVDGTDYWTVRNSWGPEWGEQGYIRMQRSISKKEGLCGIAMMASYPIKNSSNNPTGPSSSPKDEL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1607 362 Pfam Papain family cysteine protease 128 344 IPR000668 GO:0006508|GO:0008234
Gso4g1607 362 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 20 351 - -
Gso4g1607 362 SMART pept_c1 128 344 IPR000668 GO:0006508|GO:0008234
Gso4g1607 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Gso4g1607 362 SMART Inhibitor_I29_2 40 95 IPR013201 -
Gso4g1607 362 SUPERFAMILY Cysteine proteinases 32 344 IPR038765 -
Gso4g1607 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Gso4g1607 362 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Gso4g1607 362 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Gso4g1607 362 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Gso4g1607 362 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
Gso4g1607 362 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 20 351 - -
Gso4g1607 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Gso4g1607 362 CDD Peptidase_C1A 129 343 IPR039417 -
Gso4g1607 362 Gene3D Cysteine proteinases 15 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1607 Gso-Chr4 45727068 45729149 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1607 K16292 - gmx:548011 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1607 4 45727068 45729149 Gso6g1474 6 14855781 14857864 GST
Gso17g1065 17 10081454 10084204 Gso4g1607 4 45727068 45729149 PCT
Gso4g1607 4 45727068 45729149 Gso17g1065 17 10081454 10084204 PCT