Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1065 ATGCTCAATACCATCGTTAAGGACCTGGAATCCGAGGAAGGGTTGTGGGATTTGTACGAGAGATGGAGGAGCCACCACACGGTTTCTCGAAGCCTCGATGAGAAGCACAACCGCTTCAACGTGTTCAAAGGCAACGTGATGCATGTCCACAGTTCCAATAAAATGGACAAGCCTTACAAGCTGAAGTTGAACAGGTTCGCTGACATGACCAACCATGAATTCAGGAGCATCTATGCTGGCTCCAAGGTTAATCATCACAGAATGTTCAGAGGCACGCCACGTGGGAATGGTACTTTCATGTATCAGAACGTTGACAGGGTTCCTTCTTCCGTAGATTGGAGGAAGAAAGGTGCTGTCACTGATGTAAAGGATCAAGGCCAATGCGGTAGTTGTTGGGCGTTTTCAACTATTGTAGCTGTTGAAGGTATTAACCAAATCAAGACACATAAGCTAGTTCCCTTGTCTGAGCAAGAACTTGTAGATTGTGACACTACACAAAATCAAGGATGCAATGGTGGGTTAATGGAATCTGCGTTCGAGTTTATCAAGCAATACGGTATAACTACAGCAAGCAATTACCCTTATGAAGCAAAAGATGGAACTTGTGATGCATCAAAGGTGAATGAACCTGCAGTGTCAATTGATGGCCATGAGAATGTCCCCGTGAACAATGAGGCCGCATTGCTCAAAGCTGTTGCCCATCAACCTGTATCGGTAGCCATTGAAGCTGGGGGAATTGACTTCCAGTTCTATTCAGAGGGAGTATTTACGGGAAACTGTGGCACTGCTCTGGATCATGGGGTAGCAATTGTGGGCTATGGAACAACTCAAGATGGAACCAAATATTGGACAGTGAAGAACTCATGGGGATCCGAATGGGGAGAAAAGGGTTACATTAGAATGAAAAGGAGCATATCTGTCAAGAAAGGTCTTTGTGGCATAGCAATGGAAGCTTCCTATCCAATCAAAAAGTCCTCTAGCAAACCAAGGGAACATTCATCATATCCTAAAGACGAGCTTTAA 1023 0.4477 MLNTIVKDLESEEGLWDLYERWRSHHTVSRSLDEKHNRFNVFKGNVMHVHSSNKMDKPYKLKLNRFADMTNHEFRSIYAGSKVNHHRMFRGTPRGNGTFMYQNVDRVPSSVDWRKKGAVTDVKDQGQCGSCWAFSTIVAVEGINQIKTHKLVPLSEQELVDCDTTQNQGCNGGLMESAFEFIKQYGITTASNYPYEAKDGTCDASKVNEPAVSIDGHENVPVNNEAALLKAVAHQPVSVAIEAGGIDFQFYSEGVFTGNCGTALDHGVAIVGYGTTQDGTKYWTVKNSWGSEWGEKGYIRMKRSISVKKGLCGIAMEASYPIKKSSSKPREHSSYPKDEL* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1065 340 SMART Inhibitor_I29_2 19 74 IPR013201 -
Gso17g1065 340 Pfam Cathepsin propeptide inhibitor domain (I29) 19 74 IPR013201 -
Gso17g1065 340 Gene3D Cysteine proteinases 1 324 - -
Gso17g1065 340 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 125 136 IPR000169 -
Gso17g1065 340 Pfam Papain family cysteine protease 107 322 IPR000668 GO:0006508|GO:0008234
Gso17g1065 340 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 264 274 IPR025660 -
Gso17g1065 340 SMART pept_c1 107 322 IPR000668 GO:0006508|GO:0008234
Gso17g1065 340 PRINTS Papain cysteine protease (C1) family signature 125 140 IPR000668 GO:0006508|GO:0008234
Gso17g1065 340 PRINTS Papain cysteine protease (C1) family signature 266 276 IPR000668 GO:0006508|GO:0008234
Gso17g1065 340 PRINTS Papain cysteine protease (C1) family signature 282 288 IPR000668 GO:0006508|GO:0008234
Gso17g1065 340 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 282 301 IPR025661 -
Gso17g1065 340 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 6 329 - -
Gso17g1065 340 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 6 329 - -
Gso17g1065 340 CDD Peptidase_C1A 108 321 IPR039417 -
Gso17g1065 340 SUPERFAMILY Cysteine proteinases 16 322 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1065 Gso-Chr17 10081454 10084204 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1065 K16292 - gmx:100806581 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g1065 17 10081454 10084204 Gso4g1607 4 45727068 45729149 PCT
Gso17g1065 17 10081454 10084204 Gso6g1474 6 14855781 14857864 PCT
Gso4g1607 4 45727068 45729149 Gso17g1065 17 10081454 10084204 PCT
Gso6g1474 6 14855781 14857864 Gso17g1065 17 10081454 10084204 PCT