Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1417 ATGGGTTCTTTTGATTCAGGAACAATGGGGGAGCACGTGGTTTTATCTGTCCTTGACCCTCTTATAGCACCTGGAACTTTGCTACCACAACATGGTGGTGATGGTAATGCTTTAGGTTCACTCATTGAGGGTGCTACTCATGTTAATGATGTTAAGGAATGCGATACACTTGAAGAAGAAAAAGAAGACCTTATCCAAATGGTGGAATGTCGCATTTGCCAGGAGGATGATACCCTTCAAAATTTGGACATACCTTGTGCTTGCAGTGGAACCTTGAAGTTTGCTCATACGAAATGTATTCAACTATGGTGCTACGAGAAGGGTGATACAATTTGTGAAATCTGCAATAAGCCATTCAAACCTGGTTATACTGCAAATTCACCTGTCTGCCAGCCTGGAGATACTTCAATTGGTATCAGTGATGACTGGGCAATCTCTAGTAGTCCTTTAGATTTGCACAATGCTCGACTTTTGGCTATTGCGGCATTGGAGCACCAAGTTCCGGAGACTGAGCATGAAGATTATGTCAATGCTGGCACTGGTGGAACTTCATTGTGGCACTCTGTTGGTCTAATCTTAATGGCTCTTTTACTTCTGAGGCATGCTGCTCCCCTCTTCAATGCTGATGTGGAGAAAGCTTTAGCATATTTTTATTTTTTCTTTCTCCGTGCGGCTGCTGTTATCCTTCCTTGCTATCTTATGGCCTGGATGATTCGCATAATACAGCATCAAAGCAATCAGCTGAAGAACTTGCATTTATGCTACAAGCAGAGGAACAGCAAGGTTAGCAGTTTGCAATATCACCAGGACCTGTTTTTCACCGATTAA 828 0.4275 MGSFDSGTMGEHVVLSVLDPLIAPGTLLPQHGGDGNALGSLIEGATHVNDVKECDTLEEEKEDLIQMVECRICQEDDTLQNLDIPCACSGTLKFAHTKCIQLWCYEKGDTICEICNKPFKPGYTANSPVCQPGDTSIGISDDWAISSSPLDLHNARLLAIAALEHQVPETEHEDYVNAGTGGTSLWHSVGLILMALLLLRHAAPLFNADVEKALAYFYFFFLRAAAVILPCYLMAWMIRIIQHQSNQLKNLHLCYKQRNSKVSSLQYHQDLFFTD* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1417 275 SUPERFAMILY RING/U-box 68 120 - -
Gso4g1417 275 CDD RING_CH-C4HC3_MARCH 70 116 - -
Gso4g1417 275 Pfam RING-variant domain 70 115 IPR011016 GO:0008270
Gso4g1417 275 SMART ringv_2 69 116 IPR011016 GO:0008270
Gso4g1417 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 121 IPR013083 -
Gso4g1417 275 PANTHER OS11G0600700 PROTEIN 9 256 - -
Gso4g1417 275 Pfam Protein of unknown function (DUF3675) 121 238 IPR022143 -
Gso4g1417 275 ProSiteProfiles Zinc finger RING-CH-type profile. 62 122 IPR011016 GO:0008270
Gso4g1417 275 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 9 256 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1417 Gso-Chr4 41748194 41752279 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1417 - - gsj:114409718 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1417 4 41748194 41752279 Gso6g1634 6 17309449 17313687 GST