Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0904 ATGTTCAGTATGAGTCAGGAGCTGAAAAAAGCTGCCTCTAAGGGTCATGAGAAAATGGTAACATCACAAGAAGAGCAGGCAAAGATCACTGAGGTTAGAGGGTTGATAGGGCCACTATCAGATAAGGAATCTGTGTACTGTTCTGATGCTTCCATCTCAAGGTATTTAAGGTCGCGAAATTGGAATGTCAAGAAGGCAGCTCAAATGTTGAAACAGAGCCTAAAATGGAGAAAAGAATACAAACCTGAAGAGATTCGCTGGGAAGAGGTTGCTGAGGAAGCACAGACAGGGATGATGTATAAACCAAATTATCATGACAAGTATGGGAGATCAGTGCTTGTAATGAGACCTTGTGTCCAGAAGTCATCGTCAACACAAGGACAAATTAAGTATTTTGTATACAGCATTGAGCATGCCATTTTAAACCTTCCACCACACCAGGAACAGATGGTCTGGCTGGTAGATTTCCAGGGTTTCAAGCTGTCAGATATATCATTCAAGGTGGCACGTGAATCTGCCCATATTCTGCAAGAGTATTATCCAAAGCAGCTGGGTTTAATAATACTATACAATGCACCTATGATCTTCCAACCATTTTTCTCGATGGTAAAGCCCTTTTTAGAGACTGAGACTGTTAATAAAATAAAGTTTGGCTATTCGAACAACCACAACACAAAGAAGATTATGGAGGATTTGTTTGATAAGGATAATCTTGAATCTGCATTTGGTGGGAATGGTGACACAGGAGTTGACATAAATAAATATGCTGAGAGAATGAAAGAGGATGACAATAAGAAGCATTCTTTCTGGACACAGGCCAAGTCCATATCATCAGTTGCACAAAATGCTCCGTCAGATTCAATCAGGTTAGATGCAGTTTCTGATGCTTCTAACACTAAGAAAATAGACTGTTCCCGTGTCCCTAATTGA 930 0.4022 MFSMSQELKKAASKGHEKMVTSQEEQAKITEVRGLIGPLSDKESVYCSDASISRYLRSRNWNVKKAAQMLKQSLKWRKEYKPEEIRWEEVAEEAQTGMMYKPNYHDKYGRSVLVMRPCVQKSSSTQGQIKYFVYSIEHAILNLPPHQEQMVWLVDFQGFKLSDISFKVARESAHILQEYYPKQLGLIILYNAPMIFQPFFSMVKPFLETETVNKIKFGYSNNHNTKKIMEDLFDKDNLESAFGGNGDTGVDINKYAERMKEDDNKKHSFWTQAKSISSVAQNAPSDSIRLDAVSDASNTKKIDCSRVPN* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0904 309 Pfam CRAL/TRIO, N-terminal domain 8 71 IPR011074 -
Gso4g0904 309 SMART sec14_4 93 247 IPR001251 -
Gso4g0904 309 MobiDBLite consensus disorder prediction 1 25 - -
Gso4g0904 309 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 87 250 IPR001251 -
Gso4g0904 309 Gene3D - 3 282 IPR036865 -
Gso4g0904 309 Pfam CRAL/TRIO domain 96 244 IPR001251 -
Gso4g0904 309 SUPERFAMILY CRAL/TRIO N-terminal domain 21 89 IPR036273 -
Gso4g0904 309 PRINTS Cellular retinaldehyde-binding protein signature 51 73 - -
Gso4g0904 309 PRINTS Cellular retinaldehyde-binding protein signature 167 188 - -
Gso4g0904 309 PRINTS Cellular retinaldehyde-binding protein signature 200 219 - -
Gso4g0904 309 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 4 309 - -
Gso4g0904 309 PANTHER GH16843P 4 309 - -
Gso4g0904 309 CDD SEC14 104 245 IPR001251 -
Gso4g0904 309 MobiDBLite consensus disorder prediction 10 24 - -
Gso4g0904 309 SMART CRAL_TRIO_N_2 48 73 IPR011074 -
Gso4g0904 309 SUPERFAMILY CRAL/TRIO domain 87 265 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0904 Gso-Chr4 9903158 9907609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0904 51 215 Acyl Lipid Metabolism Gene Families AT5G47730 27.895 2.08e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0904 - - gmx:100777065 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0904 4 9903158 9907609 Gso4g0904 4 9903158 9907609 ECH
Gso4g0904 4 9903158 9907609 Gso6g0889 6 8490130 8492333 GST