Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0449 ATGGATTCTTCACAAGGGTCTACCATTGCTGGTTTCGTGGACAATGCATCCATTCAGAGGAATGAGACTAGTTTTGATGGCGTTCCCGTGTATGTTAAGGAACTAATTGCTGGAGGCTTTGCTGGTGCGCTTTCTAAGACTACCGTTGCACCCCTCGAACGGGTTAAGATACTTTGGCAGACAAGGACACCAGGATTTCATTCTCTTGGGGTGTACCAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAAGGGAAATGGAGCTAGTGTTATCCGCATTGTTCCATATGCAGCCTTGCATTTTATGACATATGAGCGCTACAAAAGTTGGATCTTGAATAATTATCCTGCGTTAGGTACAGGTCCTTTTATTGATCTTTTAGCAGGCTCTGCTGCCGGAGGAACTTCAGTTTTATGTACCTACCCCTTGGATCTTGCCCGTACCAAACTTGCTTACCAGGTGGCAGACACCAGAGGAGGAAGTATCAAAGATGGTATGAAAGGAGTTCAACCTGCACATAATGGCATTAAAGGTGTGCTTACAAGTGTCTATAAGGAAGGGGGAGTTCGTGGACTTTATAGGGGTGCAGGACCAACCCTTACCGGAATTCTACCATATGCTGGTTTAAAGTTCTACATGTATGAGAAATTGAAGACTCATGTTCCTGAAGAACATCAAAGGTCCATTATGATGCGTCTTTCTTGTGGTGCTCTAGCTGGATTGTTTGGACAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAGGTTGGCAGCCTGCAAAATGCTGCTCATGAGGATGCCAGATACAAAAGTACAATTGATGCACTTAGGATGATTGTTCGCAATCAAGGCTGGAGGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGGATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGTCTTGGCTTGGCATACCACCGCAACAAAAGTCTCGATCAGTTTCGGCAGCATGA 1020 0.4353 MDSSQGSTIAGFVDNASIQRNETSFDGVPVYVKELIAGGFAGALSKTTVAPLERVKILWQTRTPGFHSLGVYQSMNKLLKHEGFLGLYKGNGASVIRIVPYAALHFMTYERYKSWILNNYPALGTGPFIDLLAGSAAGGTSVLCTYPLDLARTKLAYQVADTRGGSIKDGMKGVQPAHNGIKGVLTSVYKEGGVRGLYRGAGPTLTGILPYAGLKFYMYEKLKTHVPEEHQRSIMMRLSCGALAGLFGQTLTYPLDVVKRQMQVGSLQNAAHEDARYKSTIDALRMIVRNQGWRQLFHGVSINYIRIVPSAAISFTTYDMMKSWLGIPPQQKSRSVSAA* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0449 339 ProSiteProfiles Solute carrier (Solcar) repeat profile. 232 324 IPR018108 -
Gso4g0449 339 SUPERFAMILY Mitochondrial carrier 32 320 IPR023395 -
Gso4g0449 339 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Gso4g0449 339 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Gso4g0449 339 PRINTS Mitochondrial carrier protein signature 90 110 IPR002067 GO:0055085
Gso4g0449 339 PRINTS Mitochondrial carrier protein signature 140 158 IPR002067 GO:0055085
Gso4g0449 339 PRINTS Mitochondrial carrier protein signature 198 216 IPR002067 GO:0055085
Gso4g0449 339 PRINTS Mitochondrial carrier protein signature 241 263 IPR002067 GO:0055085
Gso4g0449 339 PANTHER SOLUTE CARRIER FAMILY 25 11 333 - -
Gso4g0449 339 Pfam Mitochondrial carrier protein 31 119 IPR018108 -
Gso4g0449 339 Pfam Mitochondrial carrier protein 233 325 IPR018108 -
Gso4g0449 339 Pfam Mitochondrial carrier protein 126 227 IPR018108 -
Gso4g0449 339 Gene3D Mitochondrial carrier domain 29 326 IPR023395 -
Gso4g0449 339 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 115 IPR018108 -
Gso4g0449 339 PANTHER GRAVES DISEASE MITOCHONDRIAL SOLUTE CARRIER PROTEIN-LIKE 11 333 - -
Gso4g0449 339 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 225 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0449 Gso-Chr4 4239888 4244698 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0449 26 307 Organic Solute Cotransporters AT4G26180 56.140 5.76e-114 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0449 - - gmx:100800243 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0449 4 4239888 4244698 Gso6g0430 6 3981064 3986012 GST