Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0439 ATGGAACGTGCCCGGAGGCTAGCAAACAAGGCGATTCTCAAGAGGCTAATTTCCTCGGCCAAGGTTAATTCCCATTCGCGTTCTCTTTCATCTATTTCCCATTCCTTTTCATTACCCAAACCAGAGAACCCGATCGGAAACAACCGAAAACTCTCACATAATGTCCCATCTCGATTCATTTCACTGGATGCGCTCAAGCCGAGCGACACATTCCCACGGCGCCACAACTCGGCCACCTCGGAGGAACAAAGCAAGATGGCCCAGACATGCGGCTTCGACAGCCTGGACTCCCTCATCGACGCCACCGTCCCGAAATCAATCCGTCTGAACGACATGTCGTTCAGCGTCTTCAACGAGGGGCTAACGGAGTCGGAAATGTCGTCGCACATGAACAGCTTGGCGTCGAAGAACAAGTGCTTCAAGTCGTACATCGGGATGGGGTACTACAACACGCACGTGCCGCCCGTGATCCTGCGGAACATCATGGAGAACCCCGCCTGGTACACTCAGTACACTCCTTACCAGGCCGAGATATCTCAGGGCCGTCTCGAGTCCCTCATGAATTTCCAAACCATGATCTCAGATCTCACCGCGCTTCCAATGTCCAACGCTTCCTTGCTCGACGAAGGAACTGCGGCCGCTGAAGCAATGTCAATGTGTAACAACATCCACAAGGGAAAAAGAAAGACTTTTATCATTGCCAGTAACTGTCACCCTCAAACTGTTGATGTTTGCATAACCAGAGCGTCTGGTTTTGGTATTAAGGTTGTTACTGCGGATGTTAAGGATGTGGACTATAAATCCGGTGATGTTTGTGGGGTTCTTGTTCAGTACCCGGGGACTGAGGGTGAGATTTTGGACTATGGAGAGTTTGTAGAGGAGGCTCATGCGCATGGAGTGAAGGTTGTTATGGGGACTGATTTGTTGGCTCTGACTGTGCTGAAGCCTCCTGGGGAAATGGGGGTGGATATTGTTGTTGGCTCTGCTCAGAGGTTTGGGGTTCCGATGGGGTATGGGGGTCCACACGCCGCATTCCTCGCCACATCGCAAGAGTATAAGAGGATGATGCCTGGGAGGATCATTGGGGTCAGTGTTGATTCTTCTGGAAAGCCGGCTTTGAGAATGGCCATGCAAACTAGGGAGCAGCATATCCGGAGGGACAAGGCCACTAGCAACATTTGCACTGCTCAGGCACTGCTTGCAAACATGGCTGCTATGTATGCTGTATATCATGGACCTGAAGGACTTAAAACCATTGCCCAACGGGTTCATGGTCTTGCTGGGGTGTTTGCTCAGGGATTAAAGAAACTTGGAACCGTGGAAGTTCAGGACCATCCATTCTTTGACACTGTGAAAATTAGGACTGCCAATGCCCATGCAATTGCTGATGCTGCTTGCAAGAATGAAATCAATTTGCGGGTTGTTGATGGGAACACTATCACTGTTGCCTTTGATGAAACAACCACCTTGGAGGATGTTGATAATCTTTTCAAAGTTTTTTCTAATGGCAAGCCTGTCTCCTTCACAGCTGCATCTCTTGCACCAGAAGTTCAGACTGCACTTCCTTCTGGACTTACTAGAAAGAGTCCTTATCTGACACACCCTATCTTTAACACGTACCACACTGAGCATGAGCTTCTCAGGTACATTCATAGGCTACAATCAAAAGATCTTTCATTGTGCCACAGTATGATCCCGCTAGGATCTTGTACAATGAAGCTGAACGCTACAACTGAAATGATGCCTGTGACATGGCCTAGCTTTGCTAACATTCACCCTTTTGCACCGATTGAACAGGCTCAAGGTTATCAGGAAATGTTCGAAAATTTGGGTAAATTGCTGTGTACAATCACTGGGTTTGATTCCTTCTCTTTGCAACCTAATGCTGGTGCTGCCGGAGAATATGCTGGACTGATGGTTATTCGTGCATATCATTTGGCAAGAGGAGACCACCATCGCAATGTCTGCATTATACCTGTCTCAGCACATGGTACAAATCCTGCCAGTGCTGCTATGTGTGCAATGAAAATTGTATCTGTTGGAACTGATGCCAAGGGAAACATCAATATTGATGAGTTGAGGAAGGCTGCTGAAACACATAAGGACAACCTAGCTGCTCTCATGGTAACATATCCTTCAACCCATGGTGTTTATGAAGAAGGTATTGATGAGATATGCAAGATTATTCATGATAATGGAGGTCAAGTATATATGGATGGTGCTAACATGAATGCACAGGTAGGACTTACAAGCCCAGGTTGGATTGGAGCAGATGTTTGCCATCTGAATCTCCATAAGACATTTTGCATCCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGAGTAAAGAAACACTTGGCACCATTTTTACCATCACATCCAGTGGTTCCCACTTGTGGCATTCCTGCCCCTGGCAAGTCACAACCACTTGGTACCATTTCTGCTGCACCATGGGGCTCAGCACTGATATTGCCTATCTCATACTCTTACATAGCCATGATGGGTTCTAAAGGACTCACCGAAGCATCAAAAACAGCCATTTTGAATGCAAACTATATGGCAAAACGATTGGAGAATCATTACCCTGTTCTTTTCCGTGGGGTCAATGGAACAGTTGCTCATGAATTCATTATTGACTTAAGAGGCTTTAAGAATACTGCTGGGATAGAGCCTGAAGATGTTGCAAAGCGCCTTATGGACTATGGTTTCCATAGTCCGACAATGTCATTTCCTGTGCCTGGCACACTCATGATTGAGCCAACTGAAAGTGAAAGCAAGGCCGAGCTAGACAGGTTTTGTGATGCTCTTATTTCCATTCGACAAGAAATTGCTGAGATTGAGAAAGGAAAGGCCGACATTAACAACAATGTTCTAAAGTGTGCCCCTCATCCACCATCAGTGCTCATGGGAGATGCATGGACAAAACCATACTCTCGAGAATATGCTGCCTTCCCAGCTTCCTGGCTTCGTGTTTCTAAGTTCTGGCCTTCCACAGGACGTATTGATAATGTGTACGGTGATCGCAACCTCGTTTGCACCCTTCTCCCAACATCACAGGTTGTTGAAGAACAAGCTGCTGCAACGGCCTAA 3096 0.4722 MERARRLANKAILKRLISSAKVNSHSRSLSSISHSFSLPKPENPIGNNRKLSHNVPSRFISLDALKPSDTFPRRHNSATSEEQSKMAQTCGFDSLDSLIDATVPKSIRLNDMSFSVFNEGLTESEMSSHMNSLASKNKCFKSYIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLMNFQTMISDLTALPMSNASLLDEGTAAAEAMSMCNNIHKGKRKTFIIASNCHPQTVDVCITRASGFGIKVVTADVKDVDYKSGDVCGVLVQYPGTEGEILDYGEFVEEAHAHGVKVVMGTDLLALTVLKPPGEMGVDIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAQGLKKLGTVEVQDHPFFDTVKIRTANAHAIADAACKNEINLRVVDGNTITVAFDETTTLEDVDNLFKVFSNGKPVSFTAASLAPEVQTALPSGLTRKSPYLTHPIFNTYHTEHELLRYIHRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPIEQAQGYQEMFENLGKLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRNVCIIPVSAHGTNPASAAMCAMKIVSVGTDAKGNINIDELRKAAETHKDNLAALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTCGIPAPGKSQPLGTISAAPWGSALILPISYSYIAMMGSKGLTEASKTAILNANYMAKRLENHYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHSPTMSFPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGKADINNNVLKCAPHPPSVLMGDAWTKPYSREYAAFPASWLRVSKFWPSTGRIDNVYGDRNLVCTLLPTSQVVEEQAAATA* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0439 1031 Gene3D Aspartate Aminotransferase, domain 1 830 970 IPR015422 GO:0003824
Gso4g0439 1031 CDD GDC-P 543 938 IPR020581 GO:0004375|GO:0006546
Gso4g0439 1031 Gene3D Aspartate Aminotransferase, domain 1 143 496 IPR015422 GO:0003824
Gso4g0439 1031 PANTHER GLYCINE CLEAVAGE SYSTEM P PROTEIN 1 1031 - -
Gso4g0439 1031 Gene3D - 154 414 IPR015421 GO:0003824
Gso4g0439 1031 Gene3D - 582 806 IPR015421 GO:0003824
Gso4g0439 1031 CDD GDC-P 123 500 IPR020581 GO:0004375|GO:0006546
Gso4g0439 1031 SUPERFAMILY PLP-dependent transferases 74 499 IPR015424 -
Gso4g0439 1031 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 65 1022 IPR003437 GO:0004375|GO:0006544
Gso4g0439 1031 Pfam Glycine cleavage system P-protein 74 500 IPR020581 GO:0004375|GO:0006546
Gso4g0439 1031 Pfam Glycine cleavage system P-protein 519 793 IPR020581 GO:0004375|GO:0006546
Gso4g0439 1031 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 1 1031 IPR020581 GO:0004375|GO:0006546
Gso4g0439 1031 TIGRFAM gcvP: glycine dehydrogenase 74 1015 IPR003437 GO:0004375|GO:0006544
Gso4g0439 1031 SUPERFAMILY PLP-dependent transferases 538 1016 IPR015424 -
Gso4g0439 1031 Coils Coil 690 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0439 Gso-Chr4 4149714 4155744 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0439 K00281 - gmx:100795673 2057.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0439 4 4149714 4155744 Gso6g0421 6 3894535 3896809 GST
Gso14g0836 14 9169159 9175832 Gso4g0439 4 4149714 4155744 PCT
Gso17g1939 17 38554431 38561025 Gso4g0439 4 4149714 4155744 PCT
Gso4g0439 4 4149714 4155744 Gso14g0836 14 9169159 9175832 PCT
Gso4g0439 4 4149714 4155744 Gso17g1939 17 38554431 38561025 PCT