Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1939 ATGGAACGTGCTCGCAGGCTTGCAAACCGCGCCATTCTGAGGCGTCTGGTTTCAGAGGCAAAGCAGCATCAGAAGAATGAATCCGTGCTGCACTCTTCCACCACCCCCATACTGCTCTACTCTTCCTCCAGGTGCATGTCCTCTGTTTCCTCCCCTGTTCTTCGAAGCAGGGGATCCAAAACAGAGACCCTTCTGGGAAGAAACATGAACATATCACGCAGCGTTGTTGCTGGTGCTGGTTCCGCCCGATCCATCTCGGTTGAAGCGCTTCAACCGAGTGACACTTTCCCCCGGCGCCACAACTCTGCCACACCCGAGGAACAGAGCAAGATGGCAGAGTCGATTGGATTCGAGAGCCTCGACTCCCTCGTGGACGCCACGGTGCCTAAATCGATCCGCTTGAAGGAAATGACATTCGGGAAATTCGATGCAGGGCTTACAGAGAGCCAGATGATAGAGCACATGAAGGACTTGGCCTCAAAGAACAAGGTTTTTAAGTCCTACATTGGCATGGGGTACTATAACACTCATGTTCCACCAGTGATCCTGAGGAACATAATGGAGAACCCTGCTTGGTACACTCAGTACACACCTTACCAGGCTGAGATATCTCAGGGGAGGCTTGAGTCATTGCTGAATTACCAAACCATGATCACCGACCTCACCGGCTTGCCTATGTCGAATGCTTCATTGCTTGATGAGGGTACTGCTGCTGCTGAAGCAATGTCTATGTGTAATAATATTCAGAAAGGGAAGAAGAAGACCTTCATTATTGCAAGTAACTGCCACCCTCAGACAATTGATATTTGCAAGACAAGAGCTGATGGTTTTGATCTCAAGGTTGTGACAGCAGATCTTAAGGACATTGATTACAAGTCTGGGGATGTTTGTGGTGTGCTTGTGCAGTACCCTGGCACTGAGGGAGAGGTTTTGGACTATGGAGAGTTTGTGAAGAAGGCTCATGCTCATGAGGTGAAGGTTGTTATGGCAAGTGATTTGTTGGCACTGACTGTGTTGAAGCCTCCTGGGGAGTTTGGGGCAGATATTGTTGTTGGCTCGGCTCAGAGGTTCGGGGTGCCAATGGGGTATGGAGGGCCTCATGCAGCTTTCTTGGCCACTTCACAAGAGTACAAGAGGATGATGCCTGGGAGAATCATCGGGGTCAGTGTCGATTCTTCCGGAAAGACCGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGGCTACCAGCAACATTTGCACTGCTCAGGCACTGCTTGCAAACATGGCTGCCATGTATGCTGTGTATCATGGACCCGAAGGCCTGAAGAACATTGCACACCGTGTTCATGGTCTTGCTGGGGCATTTGCTCTTGGATTAAAGAAACTTGGAACTGTGGAAGTTCAGGACCTTCCCTTCTTTGACACTGTGAAGGTTAAGACTTCTAATGCACATGCAATTGCTGATGCTGCTCTCAAGAGTGGAATAAATTTGCGAGTTGTAGATGGAAACACTATCACTGTTGCTTTTGATGAAACAACCACATTAGAGGATGTTGATAATCTTTTCAAAGTTTTTGCTGGTGGAAAGCCGGTCCCCTTCACTGCTGCATCTCTTGCACCAGAAGTTCAGAGTGCGATTCCTTCTGGATTAGTTAGGAAGAGCCCTTATCTGACACACTCTATCTTTAACATGTACCAAACTGAGCATGAGTTGCTTAGGTACTTGTATAAGCTACAATCAAAAGATCTCTCACTATGCCACAGTATGATTCCACTTGGATCTTGTACAATGAAGCTGAATGCAACAACTGAAATGATGCCTGTGACATGGCCCAGCTTTACTGATATTCACCCTTTTGCACCAGTTGACCAGGCTCAAGGTTATCAGGAAATGTTCAATAATTTGGGTGAACTGTTGTGCACCATCACTGGGTTTGACTCCTTCTCCTTGCAACCAAATGCTGGTGCTGCTGGAGAATATGCCGGACTTATGGTTATTCGTGCATATCATTTGGCAAGGGGAGACCACCACCGCAATGTTTGCATTATACCTGTCTCAGCACATGGTACAAATCCTGCTAGTGCTGCTATGTGTGGAATGAAAATTGTCTCTGTTGGAACTGACGCCAAGGGTAACATTAATATAGAAGAATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATTTGCAAGATTATTCATGATAATGGAGGCCAAGTATATATGGATGGTGCCAACATGAATGCTCAGGTGGGACTCACAAGCCCAGGTTGGATAGGAGCAGATGTATGCCATCTCAATCTCCACAAGACATTTTGCATCCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTGATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACCATCGCTGCCGCACCATGGGGCTCAGCACTCATATTGCCAATCTCTTACACTTACATAGCCATGATGGGTTCTAAAGGACTCACCGATGCATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAATTCATCATTGACCTGAGAGGCTTTAAGAATACTGCTGGAATTGAGCCTGAAGATGTTGCAAAGCGCCTCATGGACTACGGTTTTCATGCACCAACAATGTCATGGCCTGTGCCTGGCACACTCATGATTGAGCCAACTGAGAGTGAAAGCAAGGCTGAACTAGACAGGTTCTGTGATGCTCTTATTTCCATTAGACAAGAAATTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAGAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCATACTCCAGGGAATATGCAGCCTTCCCAGCTCCTTGGCTCCGTGCTTCAAAGTTCTGGCCTACCACAGGACGTGTTGATAATGTGTACGGTGACCGCAACCTGATTTGCACCCTTCTGCCAGCATCACAGGCTGTTGAAGAACAAGCTGCTGCCACAGCATAG 3171 0.4715 MERARRLANRAILRRLVSEAKQHQKNESVLHSSTTPILLYSSSRCMSSVSSPVLRSRGSKTETLLGRNMNISRSVVAGAGSARSISVEALQPSDTFPRRHNSATPEEQSKMAESIGFESLDSLVDATVPKSIRLKEMTFGKFDAGLTESQMIEHMKDLASKNKVFKSYIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMSMCNNIQKGKKKTFIIASNCHPQTIDICKTRADGFDLKVVTADLKDIDYKSGDVCGVLVQYPGTEGEVLDYGEFVKKAHAHEVKVVMASDLLALTVLKPPGEFGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKTALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKNIAHRVHGLAGAFALGLKKLGTVEVQDLPFFDTVKVKTSNAHAIADAALKSGINLRVVDGNTITVAFDETTTLEDVDNLFKVFAGGKPVPFTAASLAPEVQSAIPSGLVRKSPYLTHSIFNMYQTEHELLRYLYKLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFTDIHPFAPVDQAQGYQEMFNNLGELLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRNVCIIPVSAHGTNPASAAMCGMKIVSVGTDAKGNINIEELRKAAETHKDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVIATGGIPAPDKPQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLENYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGNADINNNVLKSAPHPPSLLMADAWTKPYSREYAAFPAPWLRASKFWPTTGRVDNVYGDRNLICTLLPASQAVEEQAAATA* 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1939 1056 CDD GDC-P 148 525 IPR020581 GO:0004375|GO:0006546
Gso17g1939 1056 SUPERFAMILY PLP-dependent transferases 99 526 IPR015424 -
Gso17g1939 1056 TIGRFAM gcvP: glycine dehydrogenase 99 1040 IPR003437 GO:0004375|GO:0006544
Gso17g1939 1056 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 90 1047 IPR003437 GO:0004375|GO:0006544
Gso17g1939 1056 PANTHER GLYCINE CLEAVAGE SYSTEM P PROTEIN 1 1056 - -
Gso17g1939 1056 Gene3D - 607 833 IPR015421 GO:0003824
Gso17g1939 1056 Gene3D - 179 439 IPR015421 GO:0003824
Gso17g1939 1056 Coils Coil 715 735 - -
Gso17g1939 1056 Pfam Glycine cleavage system P-protein 99 525 IPR020581 GO:0004375|GO:0006546
Gso17g1939 1056 Pfam Glycine cleavage system P-protein 542 818 IPR020581 GO:0004375|GO:0006546
Gso17g1939 1056 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 1 1056 IPR020581 GO:0004375|GO:0006546
Gso17g1939 1056 SUPERFAMILY PLP-dependent transferases 547 1041 IPR015424 -
Gso17g1939 1056 CDD GDC-P 568 963 IPR020581 GO:0004375|GO:0006546
Gso17g1939 1056 Gene3D Aspartate Aminotransferase, domain 1 855 994 IPR015422 GO:0003824
Gso17g1939 1056 Gene3D Aspartate Aminotransferase, domain 1 168 521 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1939 Gso-Chr17 38554431 38561025 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1939 K00281 - gmx:100777528 2083.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0836 14 9169159 9175832 Gso17g1939 17 38554431 38561025 GST
Gso17g1939 17 38554431 38561025 Gso4g0439 4 4149714 4155744 PCT
Gso17g1939 17 38554431 38561025 Gso6g0421 6 3894535 3896809 PCT
Gso4g0439 4 4149714 4155744 Gso17g1939 17 38554431 38561025 PCT
Gso6g0421 6 3894535 3896809 Gso17g1939 17 38554431 38561025 PCT