LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso4g0140	ATGGCCACCCACGCGGCTCTTGCTTCTACAAGGATCCCTTCAAACACAAGGTTCCCATCCAAGGCCTCTCACTCTTTCCCAACCCAATGCGCCTTAAAGAGACTTGAGGTGACAGAATTCTCTGGGCTTAGATCCACTTCATGTGTCACATATGCTAACAGTGCTAGAGAATCTTCCTTTTTTGATCTTGTAGCTTCCCAACTCACTCCCAAGCAGACCAATGGATCAACTCCTGTGAGGGGAGAGACAGTGGCCAAGTTGAAGGTGGCAATCAATGGTTTCGGACGCATTGGTAGAAACTTCCTTCGCTGCTGGCACGGCCGAAAAGACTCACCCCTTGAAGTCGTTGTTGTCAACGACAGTGGTGGTGTCAAGAATGCTTCGCACCTGCTGAAATATGATTCTATGCTGGGAACCTTTAAGGCAGATGTGAAAATACTAGACAATGAAACCATCACTGTTGATGGTAAGTCCATCAAGGTTGTTTCAAGCAGGGACCCTCTTAAGCTTCCATGGGCTGAGCTTGGAATTGACATTGTTATTGAGGGAACGGGAGTGTTTGTGGATGGCCCTGGGGCTGGCAAACACATCCAAGCAGGTGCTAAGAAGGTTATCATCACTGCTCCAGCAAAGGGTGCTGATATTCCAACTTATGTTGTCGGAGTAAATGAAGGGGACTACACTCATGAGATCTCTAACATTATAAGCAACGCTTCCTGCACCACAAACTGTCTTGCTCCCTTTGTGAAGATCCTGGATGCAGAGTTTGGAATTGTGAAGGGAACCATGACAACCACGCATTCCTACACTGGAGACCAGAGGCTTTTGGATGCTTCACACCGTGACTTGAGAAGAGCCAGGGCTGCAGCACTTAACATTGTCCCAACCAGCACAGGAGCTGCCAAGGCCGTGTCTCTAGTGTTGCCACAGCTGAAGGGCAAGCTCAATGGAATAGCGCTCCGTGTGCCTACACCCAATGTTTCAGTTGTTGACCTTGTTGTGAATGTTGAGAAGAAGGGTCTTACTGCTGAAGATGTGAATGCAGCATTCAGAAAGGCAGCTGAGGGGCCGCTCAAAGGTGTATTGGACGTGTGTGATGTTCCACTTGTGTCTATCGACTTCCGCTGCTCTGATGTTTCCTCTACTATTGACTCCTCCTTGACTATGGTCATGGGAGATGATATGGTTAAAGTGGTTGCTTGGTATGACAATGAATGGGGTTACAGCCAAAGAGTGGTCGATTTGGCACATCTAGTAGCAAGCAAGTGGCCAGGGGCACCTAAAGCGGGGAGTGGAGACCCATTGGAGGATTTCTGCGAGACAAACCCTGCTGATGAGGAATGCAAAGTTTATGAATAG	1359	0.4842	MATHAALASTRIPSNTRFPSKASHSFPTQCALKRLEVTEFSGLRSTSCVTYANSARESSFFDLVASQLTPKQTNGSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVVNDSGGVKNASHLLKYDSMLGTFKADVKILDNETITVDGKSIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEGDYTHEISNIISNASCTTNCLAPFVKILDAEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGLTAEDVNAAFRKAAEGPLKGVLDVCDVPLVSIDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKWPGAPKAGSGDPLEDFCETNPADEECKVYE*	453

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso4g0140	452	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC	1	452	-	-
	Gso4g0140	452	MobiDBLite	consensus disorder prediction	8	24	-	-
	Gso4g0140	452	ProSitePatterns	Glyceraldehyde 3-phosphate dehydrogenase active site.	238	245	IPR020830	GO:0016620
	Gso4g0140	452	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	196	209	IPR020831	GO:0016620
	Gso4g0140	452	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	234	252	IPR020831	GO:0016620
	Gso4g0140	452	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	261	277	IPR020831	GO:0016620
	Gso4g0140	452	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	317	334	IPR020831	GO:0016620
	Gso4g0140	452	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	358	373	IPR020831	GO:0016620
	Gso4g0140	452	Pfam	CP12 domain	431	452	-	-
	Gso4g0140	452	SUPERFAMILY	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	240	403	-	-
	Gso4g0140	452	TIGRFAM	GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I	88	414	IPR006424	GO:0006006\|GO:0016620\|GO:0050661\|GO:0051287
	Gso4g0140	452	SMART	gp_dh_n_7	87	240	IPR020828	GO:0051287
	Gso4g0140	452	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	245	402	IPR020829	GO:0016620
	Gso4g0140	452	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	86	256	IPR036291	-
	Gso4g0140	452	MobiDBLite	consensus disorder prediction	1	24	-	-
	Gso4g0140	452	Gene3D	Dihydrodipicolinate Reductase; domain 2	239	404	-	-
	Gso4g0140	452	Gene3D	-	88	416	-	-
	Gso4g0140	452	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2	1	452	IPR020831	GO:0016620
	Gso4g0140	452	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	88	189	IPR020828	GO:0051287

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso4g0140	Gso-Chr4	1211013	1214272	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso4g0140	K05298		-	gmx:100806482	852.432

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso4g0140	4	1211013	1214272	Gso4g0140	4	1211013	1214272	ECH
	Gso4g0140	4	1211013	1214272	Gso6g0128	6	1197235	1200358	GST