Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0024 ATGGCTGTTTCGGCTATCACAGGAGCGAGGCTAACCCTAGGGATAGGGTTGGCGATACCTCTTTCCTCTCCCACGCGCTCTCGAACCGTCGCAATGGCCGTATCCGTCGACCCCAAGACCGACAACAAACTCACTCTTACCAAGTCCGAGGAAGCTTTCGCTGCTGCCAAGGAGCTGATGCCTGGAGGTGTCAACTCCCCAGTTCGTGCCTTCAAATCCGTGGGTGGTCAACCAATTGTGATTGATTCAGTCAAAGGGTCTCGTATGTGGGACATCGACGGCAATGAGTACATTGACTACGTCGGTTCTTGGGGTCCCGCAATCATTGGTCACGCTGATGATCAAGTGCTTTCAGCTCTGGTTGAAACCATGAAGAAAGGAACTAGCTTTGGTGCACCCTGTCTGCTGGAAAACACTTTGGCAGAGCTGGTTATCAATGCGGTCCCCAGCATTGAAATGGTTCGCTTTGTCAATTCAGGCACCGAAGCTTGCATGGGTGCACTACGTCTCGCCCGAGCTTATACCGGAAGAGAGAAGATCATCAAGTTTGAGGGCTGTTACCATGGCCATGCTGATCCTTTTCTTGTTAAGGCAGGTAGTGGAGTTGCCACCTTGGGACTTCCTGATTCTCCCGGTGTCCCCAAAGCTGCCACTTTTGAAACCCTTACAGCCCCCTACAATGACACTGCCGCCGTTGAGAAGCTCTTTGAGGCTAACAAAGGAGAAATCGCTGCTGTTTTCCTCGAACCTGTTGTTGGAAACGCTGGTTTCATTGTTCCTAAACCCGATTTTCATAATTTCTTGCGCAAGATCACCAAGGAGAACAATACCCTTCTTGTGTTTGATGAAGTTATGACTGGGTTTCGTTTGTCATACGGAGGTGCTCAAGAGTATTTTGGCATAACTCCTGATATAACAACTCTAGGAAAGATCATTGGTGGAGGTCTGCCGGTGGGGGCTTATGGAGGGAGGAGGGATATTATGGAGAAGGTGGCACCAGCTGGCCCAATGTATCAGGCTGGGACCTTGAGTGGGAACCCTTTGGCCATGACTGCAGGAATACAGACCCTGCAGCGTATTAAGGAGCCAGGAACTTATGAGTACTTGGACAAAATCACCGGTGAGCTTGTTCAGGGCATTATTGAAGCTGGGAAGAGGGCAGGCCATGCAATATGTGGTGGTCATATAAGGGGGATGTTTGGGTTTTTCTTCACAGAAGGACCAGTGTATAATTTTGCAGATGCCAAAAAGAGTGATACGGACAAGTTTGCTAGGTTCTTTTGGGGAATGTTGGCGGAAGGTGTCTATTTGGCACCTTCCCAGTTTGAGGCTGGCTTTACCAGCTTGGCACATACCTCTGATGACATAAAAAAGACAATAGCCGCTGCTGAGAAGGTTTTCAGGGAGATCTGA 1413 0.4947 MAVSAITGARLTLGIGLAIPLSSPTRSRTVAMAVSVDPKTDNKLTLTKSEEAFAAAKELMPGGVNSPVRAFKSVGGQPIVIDSVKGSRMWDIDGNEYIDYVGSWGPAIIGHADDQVLSALVETMKKGTSFGAPCLLENTLAELVINAVPSIEMVRFVNSGTEACMGALRLARAYTGREKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATFETLTAPYNDTAAVEKLFEANKGEIAAVFLEPVVGNAGFIVPKPDFHNFLRKITKENNTLLVFDEVMTGFRLSYGGAQEYFGITPDITTLGKIIGGGLPVGAYGGRRDIMEKVAPAGPMYQAGTLSGNPLAMTAGIQTLQRIKEPGTYEYLDKITGELVQGIIEAGKRAGHAICGGHIRGMFGFFFTEGPVYNFADAKKSDTDKFARFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFREI* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0024 470 PANTHER GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 22 468 - -
Gso4g0024 470 Gene3D Aspartate Aminotransferase, domain 1 51 463 IPR015422 GO:0003824
Gso4g0024 470 CDD OAT_like 53 467 IPR005814 GO:0008483|GO:0030170
Gso4g0024 470 Gene3D - 114 362 IPR015421 GO:0003824
Gso4g0024 470 TIGRFAM hemL: glutamate-1-semialdehyde-2,1-aminomutase 48 469 IPR004639 GO:0033014|GO:0042286
Gso4g0024 470 Pfam Aminotransferase class-III 78 404 IPR005814 GO:0008483|GO:0030170
Gso4g0024 470 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 279 315 IPR005814 GO:0008483|GO:0030170
Gso4g0024 470 PANTHER BNAA09G06670D PROTEIN 22 468 - -
Gso4g0024 470 SUPERFAMILY PLP-dependent transferases 46 469 IPR015424 -
Gso4g0024 470 Hamap Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 48 470 IPR004639 GO:0033014|GO:0042286
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0024 Gso-Chr4 234895 236849 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0024 K01845 - gmx:100790574 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0024 4 234895 236849 Gso6g0027 6 252700 254670 GST