Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2182 ATGGCTTCGGAGACGAAGGTCGTGAATCTGGCTGAGGAAGCCAAGCTCGCCGGAGAAGGTGTAACGACTCCCTCATATGCTTTTACCACCATCTGCAAGTCCCTCGTCGCTGGTGGAGTCGCCGGAGGAGTATCACGAACAGCAGTTGCTCCACTGGAACGCTTGAAGATTTTGCTACAGGTTCAGAATCCACACAGCATTAAATACAATGGAACAATTCAAGGTCTAAAATATATATGGAGAACTGAAGGTTTTCGTGGGCTGTTCAAAGGAAATGGTACTAACTGTGCGCGAATTGTCCCAAATTCTGCTGTGAAGTTCTTCAGTTATGAGCAAGCTTCCAAAGGCATACTACATCTGTACCGGAAGCAAACTGGAAATGAGGATGCTCAGCTGACTCCTCTTTTACGTCTTGGGGCTGGAGCATGTGCGGGAATAATTGCCATGTCTGCAACTTATCCAATGGACATGGTTCGAGGCAGAATAACTGTACAGACAGAGAAGTCCCCTTACCAGTACAGAGGAATGTTTCATGCCCTGTCAACTGTACTCAGGGAAGAAGGTCCACGTGCTTTATATAAGGGCTGGCTTCCTTCAGTCATTGGAGTTATTCCTTATGTGGGTCTCAACTTTGCAGTGTATGAGTCTTTGAAAGATTGGTTAATTAAATCTAATCCATTAGGTCTAGTTCAAGATTCTGAGTTGAGTGTGACAACTCGCCTGGCTTGTGGTGCTGCAGCTGGAACTATTGGACAAACTGTTGCTTACCCTCTTGATGTCATTCGTCGAAGAATGCAGATGGTGGGTTGGAACCATGCTGCTTCTGTTGTAGCTGGTGATGGAAGAGGGAAGGTACCACTTGAATACACAGGCATGGTTGATGCTTTTAGGAAAACTGTTCGGTATGAGGGATTTGGCGCATTATACAAGGGTCTGGTGCCAAATTCTGTAAAGGTGGTCCCATCCATAGCAATTGCATTTGTAACATATGAGGTGGTGAAGGACATTTTAGGAGTGGAGATCAGAATATCAGATTGA 1038 0.4557 MASETKVVNLAEEAKLAGEGVTTPSYAFTTICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHSIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILHLYRKQTGNEDAQLTPLLRLGAGACAGIIAMSATYPMDMVRGRITVQTEKSPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSNPLGLVQDSELSVTTRLACGAAAGTIGQTVAYPLDVIRRRMQMVGWNHAASVVAGDGRGKVPLEYTGMVDAFRKTVRYEGFGALYKGLVPNSVKVVPSIAIAFVTYEVVKDILGVEIRISD* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2182 345 Pfam Mitochondrial carrier protein 234 337 IPR018108 -
Gso3g2182 345 Pfam Mitochondrial carrier protein 31 116 IPR018108 -
Gso3g2182 345 Pfam Mitochondrial carrier protein 132 224 IPR018108 -
Gso3g2182 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 116 IPR018108 -
Gso3g2182 345 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Gso3g2182 345 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Gso3g2182 345 PRINTS Mitochondrial carrier protein signature 91 111 IPR002067 GO:0055085
Gso3g2182 345 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085
Gso3g2182 345 PRINTS Mitochondrial carrier protein signature 193 211 IPR002067 GO:0055085
Gso3g2182 345 PRINTS Mitochondrial carrier protein signature 244 266 IPR002067 GO:0055085
Gso3g2182 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 220 IPR018108 -
Gso3g2182 345 PANTHER BNAA09G39370D PROTEIN 5 340 - -
Gso3g2182 345 Gene3D Mitochondrial carrier domain 27 339 IPR023395 -
Gso3g2182 345 PANTHER SOLUTE CARRIER FAMILY 25 5 340 - -
Gso3g2182 345 SUPERFAMILY Mitochondrial carrier 31 332 IPR023395 -
Gso3g2182 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 235 336 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2182 Gso-Chr3 47008172 47013125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2182 18 340 EF-hand Containing Proteins AT5G51050 38.344 6.10e-67 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2182 K14684 - gmx:100777048 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2134 19 49864484 49869750 Gso3g2182 3 47008172 47013125 GST
Gso3g2182 3 47008172 47013125 Gso7g0514 7 5221085 5226067 PCT
Gso3g2182 3 47008172 47013125 Gso16g0222 16 2615354 2619723 PCT
Gso7g0514 7 5221085 5226067 Gso3g2182 3 47008172 47013125 PCT
Gso16g0222 16 2615354 2619723 Gso3g2182 3 47008172 47013125 PCT