Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0222 ATGGCTTCGGAGAATGTGAAGACCGGGGATTCGGCCGTGACGACGATCGTCAATCTCGCCGAGGAGGCCAAGCTCGCCAGGGAAGGCGTCGTCAAGGCTCCCAGCTACGCCCTCGCCAGCATCTGCAAGTCGCTCGTCGCCGGTGGCGTCGCCGGAGGAGTGTCACGTACTGCAGTTGCTCCTCTGGAACGATTGAAAATTTTGCTGCAGGTCCAGAATCCTCATAACATTAAATACAACGGAACAGTACAAGGCCTAAAATATATATGGAGAACTGAAGGATTCCGTGGACTTTTCAAAGGGAATGGTACTAATTGTGCTAGAATTGTCCCTAATTCTGCTGTGAAGTTCTTCAGTTATGAGCAAGCTTCTAAAGGTATACTGCATCTGTATAAGCAGCAAACTGGAAATGAGGATGCTCAGCTGACTCCTCTTTTACGCCTTGGAGCTGGAGCTTGTGCTGGAATAATTGCTATGTCTGCAACTTATCCAATGGATATGGTTCGAGGCAGGATTACTGTGCAGACTGAGGCATCCCCATATCAGTACAGAGGAATGTTTCATGCTTTGTCTACTGTGCTCAGGGAAGAAGGTGCTCGTGCTTTATATAAGGGTTGGCTTCCTTCAGTTATTGGAGTTATTCCTTATGTAGGTCTCAACTTTGCTGTCTATGAGTCTCTGAAAGATTATTTAATTAAATCCAACCCATTTGATCTAGTTGAAAATTCTGAGTTGAGTGTGACAACACGCCTGGCTTGTGGTGCTGCTGCTGGAACTGTTGGACAAACTGTTGCTTACCCTCTTGATGTTATTCGTCGAAGAATGCAGATGGTTGGTTGGAACCACGCTGCTTCTGTTCTAACTGGTGATGGAAGAGGCAAAGTCCCACTTGAATACACTGGAATGATTGATGCATTCAGAAAAACTGTTCAGCACGAGGGATTTGGTGCATTATACAAGGGTCTGGTGCCCAACTCTGTAAAGGTGGTCCCATCGATAGCAATTGCATTCGTAACATATGAGGTTGTGAAAGACGTTTTAGGAGTTGAGATCAGAATATCCGACTAA 1068 0.4607 MASENVKTGDSAVTTIVNLAEEAKLAREGVVKAPSYALASICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTVQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILHLYKQQTGNEDAQLTPLLRLGAGACAGIIAMSATYPMDMVRGRITVQTEASPYQYRGMFHALSTVLREEGARALYKGWLPSVIGVIPYVGLNFAVYESLKDYLIKSNPFDLVENSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWNHAASVLTGDGRGKVPLEYTGMIDAFRKTVQHEGFGALYKGLVPNSVKVVPSIAIAFVTYEVVKDVLGVEIRISD* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0222 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 39 126 IPR018108 -
Gso16g0222 355 PANTHER BNAA09G39370D PROTEIN 1 350 - -
Gso16g0222 355 PRINTS Mitochondrial carrier protein signature 44 57 IPR002067 GO:0055085
Gso16g0222 355 PRINTS Mitochondrial carrier protein signature 57 71 IPR002067 GO:0055085
Gso16g0222 355 PRINTS Mitochondrial carrier protein signature 101 121 IPR002067 GO:0055085
Gso16g0222 355 PRINTS Mitochondrial carrier protein signature 157 175 IPR002067 GO:0055085
Gso16g0222 355 PRINTS Mitochondrial carrier protein signature 203 221 IPR002067 GO:0055085
Gso16g0222 355 PRINTS Mitochondrial carrier protein signature 254 276 IPR002067 GO:0055085
Gso16g0222 355 Gene3D Mitochondrial carrier domain 37 349 IPR023395 -
Gso16g0222 355 Pfam Mitochondrial carrier protein 40 126 IPR018108 -
Gso16g0222 355 Pfam Mitochondrial carrier protein 244 347 IPR018108 -
Gso16g0222 355 Pfam Mitochondrial carrier protein 142 234 IPR018108 -
Gso16g0222 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 142 230 IPR018108 -
Gso16g0222 355 PANTHER SOLUTE CARRIER FAMILY 25 1 350 - -
Gso16g0222 355 SUPERFAMILY Mitochondrial carrier 40 342 IPR023395 -
Gso16g0222 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 245 346 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0222 Gso-Chr16 2615354 2619723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0222 45 350 EF-hand Containing Proteins AT5G51050 37.785 1.45e-64 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0222 K14684 - gmx:100809410 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0514 7 5221085 5226067 Gso16g0222 16 2615354 2619723 GST
Gso19g2134 19 49864484 49869750 Gso16g0222 16 2615354 2619723 PCT
Gso3g2182 3 47008172 47013125 Gso16g0222 16 2615354 2619723 PCT
Gso16g0222 16 2615354 2619723 Gso19g2134 19 49864484 49869750 PCT
Gso16g0222 16 2615354 2619723 Gso3g2182 3 47008172 47013125 PCT