Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1979 ATGAAGACAGGCTCCATGATTTTTTCATTATTCCATGTACCTAGATGTAGAATACAAAGCTTAGCTAATTGCTGGGGTGAAACCTTCCACGGTTTCAGTACAACTTGTGGAAACAATTCTAGCATCAGGTTGCTTGGTTCTAGAATTTATGGTCTTCAGGGAGGACAGAGAAAGAAATGGACAAGACCTATAACTACAAATACAGAAGGCAAGGGGAGCACCAAATCCAAAAGTATCAAGCATGAGATTTTGAGTGAAACCATTTTAGCAAATGCTACAGCAAATGTAAATAAAACACAGCTAGATCAATCCCAAGAAATTCAGGATTGTGACATACAACAAGAGATTGCTGAGAATAAAGACTTGTCCAGCTATACTGTTATTGTTTTTGATATAGAGACCACAGGGTTTAGCAGAGAGAATGAAAGAATCATTGAAATTGCACTTCGAGATCTTCAGGGTGGCGAGAACAGCACTTTTCAGACTCTTGTAAACCCTCAATGTAAAGTTCCTAATTCACATATTCATGGCATTACTACTCAGATGGTCAACAAACCTGATGTTCCAAGGATGGAGGACCTAATTCCCATTTTATTCCAATACGTTCGAAGTCGTGAGAAGCCTGGGGGAGATGTGTTATTTGTAGCTCACAATGCTCGCTGTTTTGATGTGCCCTTCATCATCAGTGAGTTACGGCGTTATTCCATAAAGATTCCTCCTAATTGGTTGTTTTTGGACACCCTTCCTTTAGCGCGGGAACTAATGAAGTCCGGAGGAACAACACTTTCTTCATCATCCCTAGCTGCCCTTCGTGACCTCTACGGAATTAAGGTGGATGGATCAGCTCACAGGGCTATGGTAGATGTGAACACATTGTCGTTGATTCTTTCCAGGTTGACCTCTGATCTGAAATTGACCCTATCTGACCTTGTCGACAAATCATTCACAGAATCAGATATTATCAACTCTAAGAAGAAGAAGAAGAATTAG 990 0.4051 MKTGSMIFSLFHVPRCRIQSLANCWGETFHGFSTTCGNNSSIRLLGSRIYGLQGGQRKKWTRPITTNTEGKGSTKSKSIKHEILSETILANATANVNKTQLDQSQEIQDCDIQQEIAENKDLSSYTVIVFDIETTGFSRENERIIEIALRDLQGGENSTFQTLVNPQCKVPNSHIHGITTQMVNKPDVPRMEDLIPILFQYVRSREKPGGDVLFVAHNARCFDVPFIISELRRYSIKIPPNWLFLDTLPLARELMKSGGTTLSSSSLAALRDLYGIKVDGSAHRAMVDVNTLSLILSRLTSDLKLTLSDLVDKSFTESDIINSKKKKKN* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1979 329 CDD DEDDh 128 296 - -
Gso3g1979 329 PANTHER POLYMERASE III POLC-TYPE, PUTATIVE ISOFORM 1-RELATED 3 328 - -
Gso3g1979 329 SMART exoiiiendus 126 305 IPR013520 -
Gso3g1979 329 Pfam Exonuclease 128 292 IPR013520 -
Gso3g1979 329 PANTHER THREE PRIME REPAIR EXONUCLEASE 1, 2 3 328 IPR040393 GO:0008408
Gso3g1979 329 Gene3D - 125 315 IPR036397 GO:0003676
Gso3g1979 329 SUPERFAMILY Ribonuclease H-like 124 305 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1979 Gso-Chr3 45290616 45294992 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1979 - - gmx:100799702 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1939 19 48072163 48076376 Gso3g1979 3 45290616 45294992 GST
Gso3g1979 3 45290616 45294992 Gso10g1362 10 40032190 40035780 PCT
Gso10g1362 10 40032190 40035780 Gso3g1979 3 45290616 45294992 PCT