Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1961 ATGATAGGAGAAGCTAACTTTTTGGGAGGTGTTGCTTCAGTTAAGGGAATTAAAGGATTTGACACAGAAGCTGCAAAAACAAGGTTTTTTGAAATTTATTTGGATAAGTATGCAAAACCAGATTCTGGAATAGGATTTCCAGGTGCTCTTGAACTCATTTCTCAGTGTAAAAGCAAAGGCCTTAAAGTGGCTGTTGCATCTAGTGCTGATCGTATAAAGGTTGATGCCAATCTAGCTGCTGCTGGTTTACCATTATCCATGTTCGATGCAATTGTGTCTGCAGATGCTTTTGAGAATTTGAAACCTGCTCCTGATATTTTCTTAGCTGCATCAAGAATATTGAATGTGCCCCCCAATGAGTGTATTGTTATAGAAGATGCGCTAGCTGGATTGCAAGCTGCCAAAGCTGCACAAATGAGATGCATAGCTGTAAGGACCACATTATCAGATGAGAATCTAGAACCAGCTGGCCCGACACTTATCCGAGATAACATAGGAAGTGTTTCGCTTGATGATATTCTCAGTGGTGGCTCTGTTGGATATAATAAGAGGATGCAGGGCTCTGAAACACTAAATAATTTTGCAGAGTCTTCATCTACTGTGCTTGCTGGAGGGTTGCAGGGTTCTCGGCAAGATATACTGAGATTTGGAAGTCTGGGAATTGCTATCTCTTGCCTTTTCTTCACCATAAGCAACTGGAAGGCAATGCAATATGCTTCCCCTAAAGCAGTTTGGAATCAGTTTTTTGGTGTTACCCAGCCACCCTTGGAGCAGAAAGAAGATAACTCAAGAGATGATAGGATCCAGCAATTTGAGAACTACATATCTGATCTGGAAAGCAGGGGAAATGCTCAGATTGTTCCAGAATTTCCGTCTAAACTAGAATGGCTGAATACGGCTCCACTTCAGTTTCTCAGGGATCTGAAAGGAAAAGTTGTACTGCTGGATTTCTGGACTTATTGTTGTATAAACTGTATGCATGTGTTGCAAGACCTAGATGTTTTGGAGAAAAAATACAAAGATATGGCGTTCGTTGTTGTGGGTGTTCATTCTGCAAAGTTTGATAATGAGAAAGATTCTGAAGCCATTCGCAATGCAGTTCTGCGCTATGGCATTTCTCACCCAGTTGTCAATGATGGAGACATGTATCTTTGGCGGAAGTTGGGTATAAACTCATGGCCAACATTTGCTTTTGTTGGCCCCAACGGTAAGCTTCTTGCACAACTTGCAGGAGAGGGTCATAAGAAGGTACTGGTGACGGCTTTTAATATCCTATTCGTGCATTTTATTGTGATATTTTTAAATAATGCTAGAAAATTCTAG 1323 0.4097 MIGEANFLGGVASVKGIKGFDTEAAKTRFFEIYLDKYAKPDSGIGFPGALELISQCKSKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAASRILNVPPNECIVIEDALAGLQAAKAAQMRCIAVRTTLSDENLEPAGPTLIRDNIGSVSLDDILSGGSVGYNKRMQGSETLNNFAESSSTVLAGGLQGSRQDILRFGSLGIAISCLFFTISNWKAMQYASPKAVWNQFFGVTQPPLEQKEDNSRDDRIQQFENYISDLESRGNAQIVPEFPSKLEWLNTAPLQFLRDLKGKVVLLDFWTYCCINCMHVLQDLDVLEKKYKDMAFVVVGVHSAKFDNEKDSEAIRNAVLRYGISHPVVNDGDMYLWRKLGINSWPTFAFVGPNGKLLAQLAGEGHKKVLVTAFNILFVHFIVIFLNNARKF* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1961 440 Pfam Haloacid dehalogenase-like hydrolase 29 144 IPR041492 -
Gso3g1961 440 SUPERFAMILY Thioredoxin-like 285 421 IPR036249 -
Gso3g1961 440 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 2 179 - -
Gso3g1961 440 CDD HAD_BPGM-like 20 146 - -
Gso3g1961 440 ProSiteProfiles Thioredoxin domain profile. 281 427 IPR013766 -
Gso3g1961 440 Pfam Thioredoxin-like 310 404 IPR012336 -
Gso3g1961 440 Gene3D Glutaredoxin 256 426 - -
Gso3g1961 440 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 86 144 IPR006439 -
Gso3g1961 440 PANTHER PROTEIN CBBY-LIKE 2 179 - -
Gso3g1961 440 SUPERFAMILY HAD-like 20 167 IPR036412 -
Gso3g1961 440 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 56 69 IPR006439 -
Gso3g1961 440 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 88 104 IPR006439 -
Gso3g1961 440 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 106 126 IPR006439 -
Gso3g1961 440 Gene3D - 32 175 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1961 Gso-Chr3 45146179 45153985 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1961 - - gsj:114407538 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1922 19 47926723 47942563 Gso3g1961 3 45146179 45153985 GST