Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1922 ATGGCCATGGCATTTGAAACGACTCATTTTTTACTATCGCGCCCAACCGCGTCCACCTCAACGCTCTTCTTATTCTCTTCGAATCTCACACGACCCAAACCTGCTTCGCTTCCTTCTCGATTCTTCCATTGCCGATCGAAACGCCTCGTCTTGACGCCTCGATTCGCCGTGAAAGCCTGCGCGGTGAACGTCGAGGAGAAGAATGTCGCCGCAATATCGGGAGAGTGGGGTAAGGTTTCCGCGGTGTTGTTCGACATGGACGGCGTGCTTTGCAACAGCGAAGAGCCTTCTAGAAGAGCTGGCGTTGATTTGTTCGCCGAGATGGGCGTCGATGTCACCGTCGACGATTTCGTACCGTTTATGGGAACTGGAGAAGCAAATTTTTTGGGAGGTGTTGCTTCTGTTAAGGGAGTTAAGGGATTTGATCCAGAAGCTGCAAAAAAAAGGTTTTTTGAAATATATTTGGATAAGTATGCAAAACCAGATTCTGGAATAGGATTTCCAGGTGCTCTTGAACTCATTTCTCAGTGTAAAAGCAAAGGGCTTAAAGTGGCTGTTGCGTCTAGTGCTGATCGTATAAAGGTTGATGCAAATCTAGCTGCTGCTGGTTTACCATTGTCAATGTTCGATGCAATTGTGTCTGCTGATGCTTTTGAGAATTTGAAACCTGCTCCTGATATTTTCTTAGCTGCATCAAGAATATTGAATGTGCCCTCCAATGAGTGCATTGTTATAGAAGATGCGCTAGCTGGAGTGGAAGCTGCCAAAGCTGCACAAATGAGATGCATAGCTGTAAGGACCACATTATCAGACGAGGCTCTAGAACCAGCTGGCCCAACACTTATCCGAGATAACATAGGAAGTGTTTCGCTTGATGATATTCTCAGTGGTGGCTCTGTTGGATATAATAAGAGGATGCAGGGCTCTGAAACACTAAATGATTTTGCGGAGTCTTCATCTACTGTGCTTGCTGGAGGGTTGCAGGGTTCTCGGCGAGATATACTGAGATTTGGAAGTCTGGGAATTGCTATCTCTTGCCTTTTCTTCACCATAAGTAACTGGAAGGCAATGCAATATGCTTCCCCTAAAGCAGTTTGGAATAAGTTGTTTGGTGTTACCCAGCCACCCTTGGAGCAGAAAGAAGATAACTCAAGAGATGATAGGATCCAGCAATTTGTGAACTACATATCTGATCTGGAAAGCAGGGGAAATGCTCAGATTGTTCCAGAATTTCCGTCTAAACTTGATTGGCTGAATACAGCTCCACTTCAGTTTCGCAGGGATCTGAAAGGAAAAGTTGTATTGCTGGATTTCTGGACTTATTGTTGTATAAACTGTATGCATGTGTTGCCAGAGCTAGATGTTTTGGAGAAAAAATACAAAGATATGCCGTTCGTTGTTGTGGGTGTTCATTCTGCAAAATTTGATAATGAGAAAGATTCTGAAGCCATTCGCAATGCAGTTCTACGCTATGGCATTTCTCACCCAGTTGTCAATGATGGAGACATGTATCTTTGGCGGAAGTTGGGTATAAACTCATGGCCAACATTTGCTATTGTTGGCCCCAATGGTAAGGTTCTTGCACAACTTGCAGGAGAAGGTCACAAGAAGGATCTAGATGATTTTGTGGAGGCTGCACTTCTGTTTTATGGAAAACAGAACATGTTGGACAATACGCCAATTTCATTGAGTTTGGAGAAAGATAATGATCCTCGCCTTTCCACATCTCCATTAAAGTTTCCTGGAAAGCTAGCAATTGATGTCCTTAATAACAGGCTTTTTATTTCTGACAGCAACCATAACCGCATAGTGGTTACTGACCTTGATGGGAATTTTATTGTACAAATTGGGAGCAGTGGGGAGGAAGGTTTGCAGGATGGTTCCTTCGATGATGCTACTTTTAACCGCCCTCAGGGCCTTGCTTATAATGCAAAGAAAAATATACTTTATGTTGCAGACACCGAAAACCATGCTTTGAGGGAAATTGATTTTGTTAACGAGAAAGTGAGGACTCTTGCGGGAAATGGGACCAAGGGCTCTGATTATGTTGGAGGTGGAAAAGGAGACTCTCAGCTCCTCAATTCCCCTTGGGATGTATGCTTTCATCCATTTGACGAAAAAATCTATATTGCCATGGCTGGCCAACATCAGATTTGGGAGCACAATTTATTGGATGCAACTACAAGAGTATTTAGTGGTGATGGCTATGAAAGAAATTTAAATGGATCAAGTTCTACAAGCACATCATTTGCCCAACCTTCTGGTCTTTCGTTGTCTCAAGATCTAAGGGAGATCTACATTGCTGATAGTGAGAGTAGTTCAATTCGAGCTATGGATCTGAAAACAAGAGGATCTCAGTTGTTAGCTGGTGGTGACCCAATGTTCGCTGACAATTTGTTTAAGTTTGGTGATCAAGATGGAATAGGCTCTGAGGTACTTCTTCAACATCCATTGGGAGTTGTGTGTGGAAATGATGGTGAAATTTATATTGCAGATAGCTACAATCACAAGATCAAGAAGTTAGATCCAACCAGTAAAAGAGTTAGCACCATTGCGGGGACCGGAAAAGCTGGTTTCAAAGATGGAACAGCTGTAAAAGCTCAGCTCTCTGAACCATCAGGAATTGTTGAAGGGAACAAGGGGAGATTATTCATAGCTGACACAAACAACAGCTTAATTCGATATCTAGATTTAAACATTAATGAAACTGAACTCCGTACGTTGGAGCTCAAAGGAATTCAGCCTCCTAAGCCAAAATCAAGATCTTTTAAACGTCTTAGACGACGAGCATCAGCTGACACAATGCCAATTACCATTGACACCATTTCATCAAATGAGGGAAACTTGTCTATTAAAATATCATTACCAAATGAGTATCATTTCTCAAAGGAAGCACGCAGTAGATTCAGCGTTGATATTGAACCTGAAGATGCTGTGAATATTGATCCACTCGATGGATTTCTTAGTCCAGAAGGATCTGCAACTCTTCACTTTAAAAGATCCTCTAACAATGCTTCAGTGGGAAGAATTAATTGCAAGGTTTACTATTGCAAGGAAGATGAAGTTTGTTTGTACCAGTCTTTGCTGTTTGAGGTCCCCTTCCAAGAGGGAGTTTCTAACCCTGCCGAAGCAGACGTCACTCTTGCACATTTTGTGAAACCCAAAACTTCAACCAGCAACTTCCTGCAGTCAGTTGCCCCTTAA 3204 0.4267 MAMAFETTHFLLSRPTASTSTLFLFSSNLTRPKPASLPSRFFHCRSKRLVLTPRFAVKACAVNVEEKNVAAISGEWGKVSAVLFDMDGVLCNSEEPSRRAGVDLFAEMGVDVTVDDFVPFMGTGEANFLGGVASVKGVKGFDPEAAKKRFFEIYLDKYAKPDSGIGFPGALELISQCKSKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAASRILNVPSNECIVIEDALAGVEAAKAAQMRCIAVRTTLSDEALEPAGPTLIRDNIGSVSLDDILSGGSVGYNKRMQGSETLNDFAESSSTVLAGGLQGSRRDILRFGSLGIAISCLFFTISNWKAMQYASPKAVWNKLFGVTQPPLEQKEDNSRDDRIQQFVNYISDLESRGNAQIVPEFPSKLDWLNTAPLQFRRDLKGKVVLLDFWTYCCINCMHVLPELDVLEKKYKDMPFVVVGVHSAKFDNEKDSEAIRNAVLRYGISHPVVNDGDMYLWRKLGINSWPTFAIVGPNGKVLAQLAGEGHKKDLDDFVEAALLFYGKQNMLDNTPISLSLEKDNDPRLSTSPLKFPGKLAIDVLNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLQDGSFDDATFNRPQGLAYNAKKNILYVADTENHALREIDFVNEKVRTLAGNGTKGSDYVGGGKGDSQLLNSPWDVCFHPFDEKIYIAMAGQHQIWEHNLLDATTRVFSGDGYERNLNGSSSTSTSFAQPSGLSLSQDLREIYIADSESSSIRAMDLKTRGSQLLAGGDPMFADNLFKFGDQDGIGSEVLLQHPLGVVCGNDGEIYIADSYNHKIKKLDPTSKRVSTIAGTGKAGFKDGTAVKAQLSEPSGIVEGNKGRLFIADTNNSLIRYLDLNINETELRTLELKGIQPPKPKSRSFKRLRRRASADTMPITIDTISSNEGNLSIKISLPNEYHFSKEARSRFSVDIEPEDAVNIDPLDGFLSPEGSATLHFKRSSNNASVGRINCKVYYCKEDEVCLYQSLLFEVPFQEGVSNPAEADVTLAHFVKPKTSTSNFLQSVAP* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1922 1067 Gene3D - 81 273 IPR023214 -
Gso19g1922 1067 Pfam Thioredoxin-like 431 526 IPR012336 -
Gso19g1922 1067 SUPERFAMILY Thioredoxin-like 406 544 IPR036249 -
Gso19g1922 1067 CDD NHL-2_like 616 957 IPR045302 -
Gso19g1922 1067 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 207 265 IPR006439 -
Gso19g1922 1067 SUPERFAMILY NHL repeat 575 899 - -
Gso19g1922 1067 CDD HAD_BPGM-like 81 267 - -
Gso19g1922 1067 Pfam Haloacid dehalogenase-like hydrolase 82 265 IPR041492 -
Gso19g1922 1067 PANTHER NHL REPEAT-CONTAINING PROTEIN 2 185 1064 - -
Gso19g1922 1067 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 78 288 - -
Gso19g1922 1067 ProSiteProfiles Thioredoxin domain profile. 368 548 IPR013766 -
Gso19g1922 1067 Gene3D Putative phosphatase; domain 2 92 163 IPR023198 -
Gso19g1922 1067 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 79 90 IPR006439 -
Gso19g1922 1067 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 177 190 IPR006439 -
Gso19g1922 1067 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 209 225 IPR006439 -
Gso19g1922 1067 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 227 247 IPR006439 -
Gso19g1922 1067 ProSiteProfiles NHL repeat profile. 814 844 IPR001258 GO:0005515
Gso19g1922 1067 Pfam NHL repeat 634 659 IPR001258 GO:0005515
Gso19g1922 1067 Pfam NHL repeat 814 840 IPR001258 GO:0005515
Gso19g1922 1067 Gene3D - 551 721 IPR011042 -
Gso19g1922 1067 Gene3D - 793 896 IPR011042 -
Gso19g1922 1067 Gene3D Glutaredoxin 378 549 - -
Gso19g1922 1067 SUPERFAMILY HAD-like 75 291 IPR036412 -
Gso19g1922 1067 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 78 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1922 Gso-Chr19 47926723 47942563 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1922 - - gmx:100795843 2110.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1922 19 47926723 47942563 Gso19g1922 19 47926723 47942563 ECH
Gso19g1922 19 47926723 47942563 Gso3g1961 3 45146179 45153985 GST