Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1942 ATGGGGACTGAAAATCCTGGTCGTCCAACCTTCCCTCCTTCAAGACCTGCTTCATCGCCTTTTGCCGCTGCACAGACAGTGTCACCTTTTTCGTCAACCGGTCCCGTGGCTGGATCAGAGCCTCCTTCTTTTCGCCCTAGTCCTTCTGCTCCTCCACCGCAAGGCGCCATGCGGTTTTCGTCGGCTGGACCTGCTGCAGTTAGACCCGGAGCACCCAGTTTTAGACCTGCACCACCAGGGAGGTTCAATGATCCATCAGTACCTCCTCCAGTGGGACCTTCCAATGCCCCACCGGCTGCTGGACCTTTCCAGCAGTTTCCGCCACCGCCTTTTCCCCCAACAATGCAGCCACGTGGTCCTCCGCAGCCAATGTTACCGCCATCAATTCAATCTCCACCTAGTCAAGCACTGCCTTTTCCCACGTCTCTTCCGGCTCAACCACAGATGCCTTCTGTTCCAATGGGCTCTCCCCCGCCGCCGCCACAAAGTGCTGCTCCTGCACATTTAGGTTCAAATTTTCCTCCTCCGCCACCTACAATTCAGCCATCTTTTCCTGGGTACCCGAGTAAGCATGCCGGTCCTGAAATGCAAGCTCCACCTATGCACTCCTCGTTCCCTGCTAATCAAGGAAATTTTGGGCCTGTCCCGCCTGCGGCTTCTTCTCCTTTTTTGTCTCACCCAGGAGGTTATGTTCCATCACCCCCAATGGCTCCCCCACTAGGTATCCAGCCAATGCAGCAGCCAGGATCTGTGCCCCCAATGGGTGCCATTCAGGGCTTGGCAGAAGACTTCAACGCACTCACATTGCAAACTCGTCCTGGAACAATGGATCCATTATTTGATGCCAAGGAACTTCCAAGGCCATTGGAAGGTGATGTTGAACCAAAGAATTTGGTTGACATGTATCCCATGAACTGCAGTCCCCGGTATCTACGACTCACAACCAGTGCAGTTCCTAGCTCCCAGTCCTTGGCTTCAAGGTGGCATCTTCCTCTTGGAGCAGTTGTATGTCCGCTTGCTGAACCTCCTGATGGGGAAGAGGTGCCTATAGTTAATTTTGCTCCAGCTAGTGTTGTCCGCTGCAGAAGATGTCGCACATATGTGAATCCTTATATGACATTTTCGGAAGCTGGAAGAAAGTTCCGTTGCAACATCTGTACCTTGCTTAACGATGTTCCTAGTGAATATTATGCTCAATTAGATGCAACTGGAAAAAGAGTTGATATAAATCAACGACCTGAGCTTACAAAGGGGACTGTAGAATTTGTTGCCCCTGCTGAGTACATGGTGCGGCCTCCTATGCCACCAGTGTATTTCTTCCTCATTGATGTTTCCATATCTGCTGTTAGAAGTGGCATGATTGAGGTTGTAGCCAATACAATAAAGTCATGCTTAGATGAGCTGCCCGGCTTTCCACGTACGCAAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGTCTTCCTTGACTCAACCACAGATGTTGGTAGTGTCAGATCTCGATGATATATTTATTCCACTGCCAGATGATCTTCTCGTTAACTTGTCTGAATCAAGAAATGTGGTAGAAACCTTCCTAGATAGTTTGCCAACCATGTTCCAGGACAATGTAAACTTGGAATCAGCTTTTGGTCCTGCTCTTAAGGCTGCATTTATGGTTATGAGTCAACTTGGAGGGAAATTGTTAATATTTCAAAACACACTTCCATCTCTTGGTGTTGGCCGCTTGAAGTTACGTGGAGATGATTCTCGTGTTTACGGGACAGACAAAGAATATGGATTGAGACTGCCTGATGATCCATTCTATAAACAAATGGCTGCTGAGTTTTCCAAGTACCAAATCTCAACAAATGTGTATGCATTCAGTGATAAGTACACTGACATAGCCTCCTTAGGAACTCTGGCAAAGTATACTGCTGGTCAAGTGTATTACTACCCAGCTTTCCAATCAGCCATTCATGGGGAGAAATTGAGACATGAATTGAGGAGAGACCTTACCAGAGAAACTGCATGGGAAGCTGTAATGCGCATTAGATGTGCAAAAGGTGTTCGCTTCACAACTTATCATGGAAACTTCATGCTGAGGTCCACTGATTTGTTAGCACTTCCTGCTGTAGATTGTGATAAAGCCTTTGCCATGCAGTTATCACTTGAAGAGACATTGTTGACAACTCAGACAATGTATTTGCAAGTAGCATTGTTATATACTGCATCTTGTGGTGAAAGGCGAATAAGAGTACACACAATGGCACTTCCAGTAGTTACAGAGTTAGCAGATATCTATCGGCTGGCTGATACGGGTGCAATTGTATCACTGTTAAGTAGGCTAGCAATTGAGAAAACATTGTCCCAAAAACTGGAAGATGCACGGAGTGCTGTTCAACTAAGAGTTGTGAAAGCCCTCAGGGAATATCGAAATCTTTATTCTGTGCAACATCGCTTGGCAAACAGAATGATATATCCTGAGTCTTTAAAGTTCTTAATGTTGTATGGATTAGCCCTTTGTAGATCAACAGCTTTACGTGGAGGGTATGGCGATGTTCCACTGGATGAACGGTGTGCTGCAGGACACATAATGATGACTGTATCAATAAAAAGACTGTTGAAACTTCTCTATCCTAGCTTAATTCGACTTGATGAATATCTTCTGAAGGCATCTGTACAGGCTGATGACTTAAAAAGTGTTGAGAGAAGGTTACCTTTGACTGGGGAGAGCTTAGACTCTAGAGGCCTTTATATTTATGATGATGGTTTCCGGTTCATTATATGGTTTGGTCGGGTGATTTCACCTGATATAGCCAAGAATTTACTTGGGGCAGACTTTGCAGCAGAACTATCAAAGACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTACTTGAGAAGTTGAGATATACAGATCGTGCATATTACCAGTTGTGCCACCTTGTGAGGCAAGGTGAACAACCCAAAGAAGGATTCCTCCTTCTTTCAAACCTTGTTGAGGACCAGATGGGTGGTAACAGTGGGTATGCTGAATGGATGCTGCAGATATCCCGACAAGTGCAGCAATCATAA 3087 0.459 MGTENPGRPTFPPSRPASSPFAAAQTVSPFSSTGPVAGSEPPSFRPSPSAPPPQGAMRFSSAGPAAVRPGAPSFRPAPPGRFNDPSVPPPVGPSNAPPAAGPFQQFPPPPFPPTMQPRGPPQPMLPPSIQSPPSQALPFPTSLPAQPQMPSVPMGSPPPPPQSAAPAHLGSNFPPPPPTIQPSFPGYPSKHAGPEMQAPPMHSSFPANQGNFGPVPPAASSPFLSHPGGYVPSPPMAPPLGIQPMQQPGSVPPMGAIQGLAEDFNALTLQTRPGTMDPLFDAKELPRPLEGDVEPKNLVDMYPMNCSPRYLRLTTSAVPSSQSLASRWHLPLGAVVCPLAEPPDGEEVPIVNFAPASVVRCRRCRTYVNPYMTFSEAGRKFRCNICTLLNDVPSEYYAQLDATGKRVDINQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVANTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFIPLPDDLLVNLSESRNVVETFLDSLPTMFQDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNTLPSLGVGRLKLRGDDSRVYGTDKEYGLRLPDDPFYKQMAAEFSKYQISTNVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSAIHGEKLRHELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTMYLQVALLYTASCGERRIRVHTMALPVVTELADIYRLADTGAIVSLLSRLAIEKTLSQKLEDARSAVQLRVVKALREYRNLYSVQHRLANRMIYPESLKFLMLYGLALCRSTALRGGYGDVPLDERCAAGHIMMTVSIKRLLKLLYPSLIRLDEYLLKASVQADDLKSVERRLPLTGESLDSRGLYIYDDGFRFIIWFGRVISPDIAKNLLGADFAAELSKTTLSEHDNEMSRRLVKVLEKLRYTDRAYYQLCHLVRQGEQPKEGFLLLSNLVEDQMGGNSGYAEWMLQISRQVQQS* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1942 1028 SUPERFAMILY Zn-finger domain of Sec23/24 349 432 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Gso3g1942 1028 PANTHER SEC24-RELATED PROTEIN 29 1027 - -
Gso3g1942 1028 SUPERFAMILY Helical domain of Sec23/24 770 877 IPR036175 GO:0006886|GO:0006888|GO:0030127
Gso3g1942 1028 SUPERFAMILY beta-sandwich domain of Sec23/24 107 768 - -
Gso3g1942 1028 MobiDBLite consensus disorder prediction 228 246 - -
Gso3g1942 1028 Pfam Gelsolin repeat 905 957 IPR007123 -
Gso3g1942 1028 Gene3D von Willebrand factor, type A domain 435 672 IPR036465 -
Gso3g1942 1028 Pfam Sec23/Sec24 trunk domain 433 669 IPR006896 GO:0006886|GO:0006888|GO:0030127
Gso3g1942 1028 Pfam Sec23/Sec24 zinc finger 359 396 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Gso3g1942 1028 Gene3D - 304 417 - -
Gso3g1942 1028 SUPERFAMILY vWA-like 433 672 IPR036465 -
Gso3g1942 1028 MobiDBLite consensus disorder prediction 1 247 - -
Gso3g1942 1028 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 887 1027 IPR036180 -
Gso3g1942 1028 Gene3D Severin 878 1006 IPR029006 -
Gso3g1942 1028 Gene3D - 306 758 - -
Gso3g1942 1028 MobiDBLite consensus disorder prediction 19 38 - -
Gso3g1942 1028 CDD Sec24-like 433 674 IPR041742 GO:0006886|GO:0006888|GO:0030127
Gso3g1942 1028 Pfam Sec23/Sec24 beta-sandwich domain 675 759 IPR012990 -
Gso3g1942 1028 Pfam Sec23/Sec24 helical domain 770 873 IPR006900 GO:0006886|GO:0006888|GO:0030127
Gso3g1942 1028 MobiDBLite consensus disorder prediction 71 184 - -
Gso3g1942 1028 Gene3D Sec23/Sec24 helical domain 759 1025 - -
Gso3g1942 1028 PANTHER OS04G0129500 PROTEIN 29 1027 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1942 Gso-Chr3 44980235 44989300 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1942 K14007 - gmx:100810009 1908.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1905 19 47771134 47780773 Gso3g1942 3 44980235 44989300 GST