Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1905 ATGGGGACCGAAAATCCTGGTCGTCCAACCTTCCCTCCTTCAAGACCTGCTTCATCGCCTTTTGCCGCTGCACAGACAGTATCACCTTTTTCGTCAAGCGGTCCCGTTGCTGGATCAGAGCCTCCTTCTTTTCGGCCTAGTCCTCCAGCTCCTCCGCCGCAAGCCGCCACGCCGTTTTCGTCGGCTGGACCTGCTGCAGTTAGACCTGGGGCACCCAGTTTTAGACCTGCACCACCAGGGAGGTTCAATGATCCATCGGTACCGCTTCCCGTGCGACCATCAAATGCCTCACCGGCTGCTGGGCCTTTTCAGCAGTTTCCGCCGGCACCGTCCTTTCCCCCAACAATGCAACCACGTGGTCCTCCGCTGCCAATGGGACCACCATCAATTCAATCTCCACCTAGTCAAGCACAGCCTTTTCCCACGTCTCTTCCAGCTCAGCCACAGATGCCTTCTGTTCCAATGGGCTCTCCCCCGCCACAAAGTGCTGCTCCTGCACATTTAGGTTCAAATTTTCCTCCGCCACCTACAATTCAGCCATCTTTTCCTGGGTACCCGAGTAAGCAGGCTGGTCCTGAAATGCAAGCTCCACCTATGCATTCCTCATTCCCTGCTAATCAAGGAAATTTTGGGCCTGTCCCACCTGCAGCGGCTTCTCCTTTTTTGTCTCATCCAGGAGGCTATGTTCCACCGCCTCCAATGGCTCCCCCGCTAGGTATCCAGCCAATGCAGCAGCCAGGATCTGTGCCCCCAATGGGTGCTGTTCAGGGCTTGGCAGAAGACTTCAACGCACTCACATTGCAAACTCGTCCTGGAACAATGGATCCGTTATTTGATGCCAAGGAACTTCCACGGCCATTAGAAGGTGATATTGAACCAAAGAATTTGGTTGACATGTATCCCATGAACTGCAATCCCCGGTATCTACGACTCACAACCAGTGCAGTTCCTAGCTCTCAGTCCTTGGCTTCAAGGTGGCATCTTCCTCTTGGAGCAGTTGTATGTCCGCTTGCTGAGCCTCCTGATGGGGAAGAGGTGCCTATAGTTAATTTTGCTCCAGCTAGTGTTGTCCGCTGCAGAAGATGTCGCACATATGTGAATCCTTATATGACATTTACGGAAGCTGGAAGAAAGTTTCGTTGCAACGTCTGTACCTTGCTTAATGATGTGCCTAGTGAGTATTATGCACAATTAGATGCAACTGGAAAAAGAGTTGACATAAATCAACGACCTGAACTTACAAAGGGGACTGTAGAATTTGTTGCCCCTGCTGAGTACATGGTGAGGCCTCCTATGCCACCAGTGTATTTCTTCCTCATCGATGTTTCCATATCTGCTGTTAGAAGTGGCATGATTGAGGTTGTGGCCAATACAATTAAGTCATGCTTAGATGAGCTGCCCGGCTTTCCACGTACGCAAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGTCTTCCTTGACTCAACCACAGATGTTGGTAGTGTCAGATCTCGATGATATATTTATTCCACTGCCAGATGATCTTCTTGTTAACTTGTCTGAATCAAGAAGTGTGGTAGAAACCTTCCTAGATAGTTTGCCAACCATGTTTCAGGACAATGTTAACTTGGAATCAGCTTTTGGTCCTGCTCTCAAGGCTGCGTTTATGGTTATGAGTCAACTTGGAGGAAAATTGTTAATATTTCAAAACACACTCCCATCTCTTGGTGTTGGCCGCTTGAAGTTACGTGGAGATGATTCTCGTGTTTACGGGACAGACAAAGAGCATGGACTGAGACTGCCTGAAGATCCATTCTATAAACAAATGGCTGCTGAGTTTTCCAAGTACCAAATCTCAACAAATGTGTATGCATTCAGTGATAAGTACACTGACATAGCCTCCTTAGGAACTCTGGCAAAGTATACTGCTGGTCAAGTGTATTACTATCCAGCTTTCCAATCAGCCATTCACGGGGAGAAATTGAGACATGAATTGAGGAGAGACCTTACCAGAGAAACTGCATGGGAAGCTGTAATGCGCATTAGATGTGCAAAAGGTGTTCGCTTCACAACTTATCATGGAAACTTCATGCTGAGGTCCACCGATTTGTTAGCACTTCCTGCTGTAGATTGTGATAAAGCCTTTGCCATGCAGTTATCACTTGAAGAGACATTGTTGACAACTCAGACAATGTATTTACAAGTAGCATTGCTATATACTGCATCTTGTGGTGAAAGGCGAATAAGAGTACACACAATGGCAGTTCCAGTAGTTACAGAGTTAGCAGATATATATCGGCTGGCTGATACTGGTGCAATTGTATCACTGTTAAGTAGGCTAGCAATTGAGAAAACATTGTCCCAAAAACTGGAAGATGCACGGAGTGCTGTTCAACTAAGAGTTGTAAAAGCCCTCAGGGAATATCGAAATCTTTATGCTGTGCAACATCGCTTGGCAAACAGAATGATATATCCTGAGTCTTTAAAGTTCTTAATGTTGTATGGATTAGCCCTTTGTAGATCAACAGCTTTACGTGGAGGGTATGGTGATGTTCCACTGGATGAACGATGTGCAGCAGGACACATAATGATGACTGTATCAATAAGAAGACTGTTGAAACTTCTCTATCCTAGCTTGATTCGACTTGATGAATATCTTCTGAAGGCATCTGTACAGGCTAATGACTTAAAAAGTGTTGAGAGAAGGTTACCTTTGACTGGGGAGAGCTTAGACTCTAGAGGTCTTTATATTTATGATGATGGCATCCGGTTCATTATATGGTTTGGTAGGGTGATTTCGCCTGATATAGCAAAGAATTTACTTGGGGCAGACTTTGCTGCAGAATTATCAAAGCAGACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTACTTGAGAAGTTGAGAAATACAGATCGTGCATATTACCAGTTGTGCCACCTTGTGAGGCAAGGTGAACAGCCCAAAGAGGGATTCCTCCTTCTTGCAAACCTTGTTGAGGACCAGATGGGTGGTAACAGTGGGTATGCTGAATGGATGCTGCAGATATCTCGACAAGTGCAGCAATCATAA 3084 0.4601 MGTENPGRPTFPPSRPASSPFAAAQTVSPFSSSGPVAGSEPPSFRPSPPAPPPQAATPFSSAGPAAVRPGAPSFRPAPPGRFNDPSVPLPVRPSNASPAAGPFQQFPPAPSFPPTMQPRGPPLPMGPPSIQSPPSQAQPFPTSLPAQPQMPSVPMGSPPPQSAAPAHLGSNFPPPPTIQPSFPGYPSKQAGPEMQAPPMHSSFPANQGNFGPVPPAAASPFLSHPGGYVPPPPMAPPLGIQPMQQPGSVPPMGAVQGLAEDFNALTLQTRPGTMDPLFDAKELPRPLEGDIEPKNLVDMYPMNCNPRYLRLTTSAVPSSQSLASRWHLPLGAVVCPLAEPPDGEEVPIVNFAPASVVRCRRCRTYVNPYMTFTEAGRKFRCNVCTLLNDVPSEYYAQLDATGKRVDINQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVANTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFIPLPDDLLVNLSESRSVVETFLDSLPTMFQDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNTLPSLGVGRLKLRGDDSRVYGTDKEHGLRLPEDPFYKQMAAEFSKYQISTNVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSAIHGEKLRHELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTMYLQVALLYTASCGERRIRVHTMAVPVVTELADIYRLADTGAIVSLLSRLAIEKTLSQKLEDARSAVQLRVVKALREYRNLYAVQHRLANRMIYPESLKFLMLYGLALCRSTALRGGYGDVPLDERCAAGHIMMTVSIRRLLKLLYPSLIRLDEYLLKASVQANDLKSVERRLPLTGESLDSRGLYIYDDGIRFIIWFGRVISPDIAKNLLGADFAAELSKQTTLSEHDNEMSRRLVKVLEKLRNTDRAYYQLCHLVRQGEQPKEGFLLLANLVEDQMGGNSGYAEWMLQISRQVQQS* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1905 1027 Pfam Sec23/Sec24 helical domain 768 871 IPR006900 GO:0006886|GO:0006888|GO:0030127
Gso19g1905 1027 Gene3D Severin 876 1005 IPR029006 -
Gso19g1905 1027 SUPERFAMILY Helical domain of Sec23/24 768 875 IPR036175 GO:0006886|GO:0006888|GO:0030127
Gso19g1905 1027 CDD Sec24-like 431 672 IPR041742 GO:0006886|GO:0006888|GO:0030127
Gso19g1905 1027 Gene3D von Willebrand factor, type A domain 433 670 IPR036465 -
Gso19g1905 1027 Gene3D - 302 415 - -
Gso19g1905 1027 MobiDBLite consensus disorder prediction 103 161 - -
Gso19g1905 1027 Gene3D Sec23/Sec24 helical domain 757 1024 - -
Gso19g1905 1027 PANTHER SEC24-RELATED PROTEIN 28 1026 - -
Gso19g1905 1027 MobiDBLite consensus disorder prediction 41 58 - -
Gso19g1905 1027 Pfam Sec23/Sec24 zinc finger 357 394 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Gso19g1905 1027 MobiDBLite consensus disorder prediction 19 38 - -
Gso19g1905 1027 MobiDBLite consensus disorder prediction 1 218 - -
Gso19g1905 1027 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 885 1026 IPR036180 -
Gso19g1905 1027 Pfam Sec23/Sec24 beta-sandwich domain 673 757 IPR012990 -
Gso19g1905 1027 SUPERFAMILY beta-sandwich domain of Sec23/24 191 766 - -
Gso19g1905 1027 Gene3D - 304 756 - -
Gso19g1905 1027 SUPERFAMILY vWA-like 431 670 IPR036465 -
Gso19g1905 1027 MobiDBLite consensus disorder prediction 71 86 - -
Gso19g1905 1027 PANTHER OS04G0129500 PROTEIN 28 1026 - -
Gso19g1905 1027 Pfam Sec23/Sec24 trunk domain 431 667 IPR006896 GO:0006886|GO:0006888|GO:0030127
Gso19g1905 1027 SUPERFAMILY Zn-finger domain of Sec23/24 347 430 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1905 Gso-Chr19 47771134 47780773 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1905 K14007 - gmx:100791083 1912.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1905 19 47771134 47780773 Gso3g1942 3 44980235 44989300 GST