LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g1918	ATGGCTTCAACTCATCTGCTTCCCCTAGCAACCTTCTTCTTACTTCTCTCCGCTTCTTATCTCCAGATTGCTGGGGCGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAGGAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCTGCTATAAATCCTCGTTTCTCCAATTATACAGTTGAACAATTTAAGCGCCTTCTTGGAGTCAAACCAATGCCTAAGAAGGAACTTAGAAGTACACCTGCTATATCTCACCCAAAGACGTTGAAATTGCCAAAGAATTTTGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGATCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTTGAATCATTGTCAGATCGCTTTTGCATTCATTTTGATGTTAATATCTCTCTCTCTGTTAATGACCTTCTTGCATGCTGTGGCTTTCTGTGTGGATCTGGCTGTGATGGAGGATATCCCTTATATGCATGGCGATACTTAGCCCACCATGGTGTTGTCACTGAAGAGTGTGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCAGCTTATCGGACTCCCAAGTGTGTTAAAAAGTGTGTAAGTGGAAACCAAGTTTGGAAGAAGTCAAAGCACTATAGTGTTAGTGCATACAGAGTCAACTCTGATCCCCATGATATCATGGCGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTTACCGTTTATGAGGATTTTGCTTACTACAAATCAGGAGTTTACAAACACATCACTGGTTATGAACTAGGTGGTCATGCAGTAAAGCTAATTGGGTGGGGAACAACTGATGATGGGGAGGACTATTGGCTTCTCGCAAATCAGTGGAACAGAGAATGGGGAGATGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGGATGTAACAGCTGGTTTGCCTTCCACCAAAAACCTCGTCAGAGAGGTGACTGATATGGATGCTGACGCTGCTGTTTCATTCTGA	1074	0.4376	MASTHLLPLATFFLLLSASYLQIAGAEAQPLTSLKLNSHILQESTAKEINENPEAGWEAAINPRFSNYTVEQFKRLLGVKPMPKKELRSTPAISHPKTLKLPKNFDARTAWSQCSTIGRILDQGHCGSCWAFGAVESLSDRFCIHFDVNISLSVNDLLACCGFLCGSGCDGGYPLYAWRYLAHHGVVTEECDPYFDQIGCSHPGCEPAYRTPKCVKKCVSGNQVWKKSKHYSVSAYRVNSDPHDIMAEVYKNGPVEVAFTVYEDFAYYKSGVYKHITGYELGGHAVKLIGWGTTDDGEDYWLLANQWNREWGDDGYFKIRRGTNECGIEEDVTAGLPSTKNLVREVTDMDADAAVSF*	358

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g1918	357	SUPERFAMILY	Cysteine proteinases	46	337	IPR038765	-
	Gso3g1918	357	SMART	pept_c1	101	336	IPR000668	GO:0006508\|GO:0008234
	Gso3g1918	357	Gene3D	Cysteine proteinases	33	343	-	-
	Gso3g1918	357	PANTHER	CYSTEINE PROTEASE FAMILY C1-RELATED	17	343	-	-
	Gso3g1918	357	ProSitePatterns	Eukaryotic thiol (cysteine) proteases histidine active site.	282	292	IPR025660	-
	Gso3g1918	357	ProSitePatterns	Eukaryotic thiol (cysteine) proteases cysteine active site.	123	134	IPR000169	-
	Gso3g1918	357	CDD	Peptidase_C1A_CathepsinB	102	335	-	-
	Gso3g1918	357	PANTHER	CATHEPSIN B-LIKE PROTEASE 3	17	343	-	-
	Gso3g1918	357	Pfam	Papain family cysteine protease	101	334	IPR000668	GO:0006508\|GO:0008234
	Gso3g1918	357	PRINTS	Papain cysteine protease (C1) family signature	123	138	IPR000668	GO:0006508\|GO:0008234
	Gso3g1918	357	PRINTS	Papain cysteine protease (C1) family signature	284	294	IPR000668	GO:0006508\|GO:0008234
	Gso3g1918	357	PRINTS	Papain cysteine protease (C1) family signature	300	306	IPR000668	GO:0006508\|GO:0008234
	Gso3g1918	357	Pfam	Peptidase family C1 propeptide	42	81	IPR012599	GO:0004197\|GO:0050790

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g1918	Gso-Chr3	44728897	44735319	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g1918	K01363		-	gmx:100778103	748.429

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso19g1883	19	47553452	47559171	Gso3g1918	3	44728897	44735319	GST