LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso19g1883	ATGGCTTCAACTCTGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGATTGCTGGGGCGAAAGCACAACCTTTGACTAGTCTCAAGCTTAACTCTCCGATCCTTCAGGAGTCTATTGCTAAAGAGATCAATGAAAATCCCGAGGCAGGATGGGAGGCTGCTATAAATCCTCATTTCTCCAATTATACAGTTGAACAATTTAAGCGCCTTCTTGGAGTCAAACCAACGCCTAAGAAGGAACTGAGAAGTACACCTGCTATATCTCACCCAAAGTCATTGAAATTGCCAAAGAATTTTGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGATCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTTGAATCATTGTCAGATCGCTTTTGCATTCATTTTGATGTAAATATCTCTCTCTCTGTTAATGACCTTCTTGCATGCTGTGGCTTTCTGTGTGGATCTGGTTGTGATGGGGGATATCCCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCAGCTTACCGGACTCCCAAGTGTGTTAAAAAGTGTGTAAGTGGGAACCAAGTTTGGAAGAAGTCAAAACATTATAGTGTCAATGCATACAGAGTGAGCTCTGATCCCCATGATATCATGACGGAAGTTTACAAGAATGGGCCAGTTGAAGTTGCATTCACTGTTTATGAGGATTTTGCTCACTACAAATCAGGAGTTTACAAACACATCACAGGTTATGAACTAGGTGGTCATGCAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGGATGTAACTGCTGGTTTGCCTTCCACCAAAAACCTCGTCAGAGAGGTGACTGATATGGATGCTGACGCTGCTGTTTCATTCTGA	1071	0.4388	MASTLLPLATFFLVLSASYLQIAGAKAQPLTSLKLNSPILQESIAKEINENPEAGWEAAINPHFSNYTVEQFKRLLGVKPTPKKELRSTPAISHPKSLKLPKNFDARTAWSQCSTIGRILDQGHCGSCWAFGAVESLSDRFCIHFDVNISLSVNDLLACCGFLCGSGCDGGYPLYAWQYLAHHGVVTEECDPYFDQIGCSHPGCEPAYRTPKCVKKCVSGNQVWKKSKHYSVNAYRVSSDPHDIMTEVYKNGPVEVAFTVYEDFAHYKSGVYKHITGYELGGHAVKLIGWGTTEDGEDYWLLANQWNREWGDDGYFKIRRGTNECGIEEDVTAGLPSTKNLVREVTDMDADAAVSF*	357

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso19g1883	356	CDD	Peptidase_C1A_CathepsinB	101	334	-	-
	Gso19g1883	356	PANTHER	CYSTEINE PROTEASE FAMILY C1-RELATED	16	342	-	-
	Gso19g1883	356	SUPERFAMILY	Cysteine proteinases	45	336	IPR038765	-
	Gso19g1883	356	Pfam	Peptidase family C1 propeptide	40	82	IPR012599	GO:0004197\|GO:0050790
	Gso19g1883	356	PRINTS	Papain cysteine protease (C1) family signature	122	137	IPR000668	GO:0006508\|GO:0008234
	Gso19g1883	356	PRINTS	Papain cysteine protease (C1) family signature	283	293	IPR000668	GO:0006508\|GO:0008234
	Gso19g1883	356	PRINTS	Papain cysteine protease (C1) family signature	299	305	IPR000668	GO:0006508\|GO:0008234
	Gso19g1883	356	PANTHER	CATHEPSIN B-LIKE PROTEASE 3	16	342	-	-
	Gso19g1883	356	Gene3D	Cysteine proteinases	32	342	-	-
	Gso19g1883	356	ProSitePatterns	Eukaryotic thiol (cysteine) proteases histidine active site.	281	291	IPR025660	-
	Gso19g1883	356	SMART	pept_c1	100	335	IPR000668	GO:0006508\|GO:0008234
	Gso19g1883	356	ProSitePatterns	Eukaryotic thiol (cysteine) proteases cysteine active site.	122	133	IPR000169	-
	Gso19g1883	356	Pfam	Papain family cysteine protease	100	333	IPR000668	GO:0006508\|GO:0008234

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso19g1883	Gso-Chr19	47553452	47559171	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso19g1883	K01363		-	gmx:100788988	754.977

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso19g1883	19	47553452	47559171	Gso3g1918	3	44728897	44735319	GST