Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1886 ATGTCCAAACAAAGGTTGCAGGGTAAGGTGGCTATTGTAACCGGTGGAGCCACCGGAATAGGAGCTGAAGCAGTGAGGATATTCGTGGAGAACGGTGCTTCCGTAGTCATAGCAGACATCAAGGACGAATTGGGTCACAACTTGGCAACTTCGTTAGGCTTAGACAAAGTGGATTACCGCCACTGTGATGTGAGAGATGAAAAACAAGTTGAAGAAACAGTTTCTTTCACATTAGAGAAATATGGTAGCTTAGAAATTTTGTTCAGCAATGCTGGAATCGCAGGCCCTTTATCGAGCATTCTAGACTTCGATCTGAATGAATTCGACAACACCATGGCCGTGAACCTTCGCGGTGCAATGGCAGCCATCAAGCACGCGGCACGTGTCATGGTGGCCAGAGAGACACGTGGATCCATAATTTGCACGACCAGTGTGGCTGGTTCCTTCGCGGGATGCGCGGGCCATGATTACACCGCATCCAAACACGGCCTTATTGGGCTTGTTCGCTCGGCGTGTAGCGAGCTTGGAGCTAAGGGGATAAGAGTGAATTCCATTTCGCCGTATGCGGTTGCGACGCCTCTGACTTGTGAGACATTCGATATGGAGCCTGGTGAAGTTGAAGCTGCGGGACATGCTTTGGCCAACTTGCATGGAATCACGTTGAAGCCTACTCATATTGCTCAAGTTGCTCTTTTTCTTGCATCTGATGAATCGGCTTATATAAGTGGACACAACTTGGTGGTGGACGGAGGTTTCTCCGTCGTTAATCGTGGCCTTCCTAGCATTAAAAATTAA 795 0.4868 MSKQRLQGKVAIVTGGATGIGAEAVRIFVENGASVVIADIKDELGHNLATSLGLDKVDYRHCDVRDEKQVEETVSFTLEKYGSLEILFSNAGIAGPLSSILDFDLNEFDNTMAVNLRGAMAAIKHAARVMVARETRGSIICTTSVAGSFAGCAGHDYTASKHGLIGLVRSACSELGAKGIRVNSISPYAVATPLTCETFDMEPGEVEAAGHALANLHGITLKPTHIAQVALFLASDESAYISGHNLVVDGGFSVVNRGLPSIKN* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1886 264 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 144 172 IPR020904 GO:0016491
Gso3g1886 264 Gene3D - 1 259 - -
Gso3g1886 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Gso3g1886 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Gso3g1886 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Gso3g1886 264 PANTHER OXIDOREDUCTASE-RELATED 1 263 - -
Gso3g1886 264 Pfam Enoyl-(Acyl carrier protein) reductase 15 253 - -
Gso3g1886 264 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 254 IPR036291 -
Gso3g1886 264 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Gso3g1886 264 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Gso3g1886 264 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Gso3g1886 264 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Gso3g1886 264 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Gso3g1886 264 PRINTS Glucose/ribitol dehydrogenase family signature 216 236 IPR002347 -
Gso3g1886 264 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 1 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1886 Gso-Chr3 44421828 44422900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1886 6 251 Acyl Lipid Metabolism Gene Families AT3G55290 29.885 8.99e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1886 - - gmx:100798299 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1851 19 47211249 47212841 Gso3g1886 3 44421828 44422900 GST