Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1844 ATGGCGCCTCGTGGAGCCACGCTGTTGTTCCTTCTATGCGCTCTCTGCTATTCTCTCATCGCCATTGCTGGAAAGAGCTATTACGATATACTTCAACTTTCTAAGGGTGCGTCGGACGAACAGATAAAGAGAGCGTATAGGAAGCTAGCATTGAAGTACCATCCTGATAAGAACCCGGGCAATGAAGAGGCTAATAAGAAATTTGCGGAGATTAGCAATGCGTATGAAGTATTGTCTGATAGCGAGAAGAGGAATATTTACGATAGGTATGGTGAAGAGGGTTTGAAGCAGCATGCTGCTAGTGGAGGCAGAGGTGGTGGAATGAACTTCCAAGATATTTTTAGCACTTTCTTTGGTGGGGGACCAATGGAGGAAGAAGAGAAAATTGTAAAAGGAGATGACTTGGTTGTTGATTTGGATGCAACACTTGAAGATTTGTACATGGGAGGTACCTTGAAGGTTTGGAGGGAAAAGAATGTACTAAAGCCTGCTCCTGGGAAAAGACGCTGTAACTGTAGAAATGAGGTTTATCACAAGCAAATTGGGCCTGGGATGTTTCAACAGATGACAGAGCAGGTCTGTGAGCAATGTCCTAACGTCAAATACGTAAGGGAGGGGTATTTCATCACTGTTGATATTGAGAAAGGCATGCAAGATGGGCAGGAGGTGCTATTCTATGAGGATGGAGAGCCCATAATTGATGGGGAATCTGGAGATTTAAGGTTTCGTATCCGAACTGCACCTCATGACGTCTTCAGAAGAGAAGGCAATGACTTGCACTCTACTGTCACTATAACTCTTGTTCAAGCCCTTGTTGGTTTTGAGAAGACCATTAAACACCTAGATGAGCATCTGGTGGACATAAGCACAAAGGAAATCACAAAGCCAAAGCAGGTGAGGAAGTTCAAAGGGGAGGGTATGCCATTGCATATGAGCAACAAAAAAGGAGATCTTTACGTCACTTTTGAGGTTCTATTTCCCACGTCTCTAAGGGAGGAGCAGAAAACAAAGATAAAAGCAATTCTTGGTTAG 1032 0.438 MAPRGATLLFLLCALCYSLIAIAGKSYYDILQLSKGASDEQIKRAYRKLALKYHPDKNPGNEEANKKFAEISNAYEVLSDSEKRNIYDRYGEEGLKQHAASGGRGGGMNFQDIFSTFFGGGPMEEEEKIVKGDDLVVDLDATLEDLYMGGTLKVWREKNVLKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCEQCPNVKYVREGYFITVDIEKGMQDGQEVLFYEDGEPIIDGESGDLRFRIRTAPHDVFRREGNDLHSTVTITLVQALVGFEKTIKHLDEHLVDISTKEITKPKQVRKFKGEGMPLHMSNKKGDLYVTFEVLFPTSLREEQKTKIKAILG* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1844 343 CDD DnaJ_C 133 330 - -
Gso3g1844 343 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Gso3g1844 343 SUPERFAMILY HSP40/DnaJ peptide-binding domain 251 336 IPR008971 GO:0006457|GO:0051082
Gso3g1844 343 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 8 342 IPR044713 GO:0006457|GO:0030544
Gso3g1844 343 Pfam DnaJ domain 27 88 IPR001623 -
Gso3g1844 343 Gene3D - 249 327 - -
Gso3g1844 343 CDD DnaJ 27 80 IPR001623 -
Gso3g1844 343 SUPERFAMILY Chaperone J-domain 24 121 IPR036869 -
Gso3g1844 343 SMART dnaj_3 25 83 IPR001623 -
Gso3g1844 343 Pfam DnaJ C terminal domain 136 327 IPR002939 -
Gso3g1844 343 PANTHER BNAA09G39960D PROTEIN 8 342 - -
Gso3g1844 343 Gene3D DnaJ domain 23 127 IPR036869 -
Gso3g1844 343 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Gso3g1844 343 SUPERFAMILY HSP40/DnaJ peptide-binding domain 130 253 IPR008971 GO:0006457|GO:0051082
Gso3g1844 343 PRINTS DnaJ domain signature 28 46 IPR001623 -
Gso3g1844 343 PRINTS DnaJ domain signature 46 61 IPR001623 -
Gso3g1844 343 PRINTS DnaJ domain signature 63 83 IPR001623 -
Gso3g1844 343 PRINTS DnaJ domain signature 83 102 IPR001623 -
Gso3g1844 343 Gene3D - 128 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1844 Gso-Chr3 44050578 44055060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1844 42 88 Miscellaneous Gene Families AT5G49580 57.447 2.47e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1844 K09517 - gmx:100799701 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1809 19 46815243 46819565 Gso3g1844 3 44050578 44055060 GST