Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1809 ATGGCGCATCGAGGAGCCACGCTGTTCTTCCTTCTATTCGCTATCTGCTATTCTCTCATCGCCATTGCTGGAAAGAGCTATTACGATATACTTCAACTGTCGAAGGGTGCATCGGACGAGCAGATAAAGAGGGCGTATAGGAAGCTAGCATTGAAGTACCATCCTGATAAGAACCCCGGCAATGAAGAAGCTAATAAGAAATTTGCTGAGATTAGCAATGCGTATGAAGTGTTGTCGGATAGCGAGAAGAGGAATATTTACGATAGGTATGGTGAGGAAGGTTTGAAGCAGCATGCTGCTAGTGGAGGCAGAGGTGGTGGAATGAACTTCCAAGATATTTTTGGCTCTTTCTTTGGTGGGGGACAAATGGAAGAAGAAGAGAAAATTGTAAAAGGAGATGACGTGGTTGTTGATTTGGATGCAACACTTGAAGATTTGTACATGGGAGGTACCTTGAAGGTTTGGAGGGAAAAGAATGTACTAAAGCCAGCATCTGGGAAAAGACGCTGTAACTGTAGAAATGAGGTTTATCACAAGCAAATTGGGCCTGGGATGTTTCAACAGATGACAGAGCAGGTCTGTGAGCAATGTCCCAACGTCAAATATGTAAGGGAGGGGTATTTCATCACTGTTGATATTGAGAAAGGCATGCAAGATGGGCAGGAGGTGCTATTTTATGAGGACGGTGAACCCATAATTGATGGAGAATCTGGAGATTTAAGGTTTCGTATCCGTACTGCACCTCATGACGTCTTCAGAAGAGAAGGCAATGACTTGCACACTACTGTCACTATAACTCTGGTTCAAGCCCTTGTTGGTTTTGAGAAGACCATTAAACACCTAGATGAGCATCTGGTGGACATAAGCACAAAGGAAATCACAAAGCCAAAGCAGGTGAGGAAGTTCAAAGGGGAGGGTATGCCATTGCATATGAGCAACAAAAAAGGAGATCTTTACGTCACTTTTGAGGTTCTATTCCCCACGTCACTAACGGAGGAGCAGAAAACAAAGATAAAAGCAATTCTTGGTTAG 1032 0.437 MAHRGATLFFLLFAICYSLIAIAGKSYYDILQLSKGASDEQIKRAYRKLALKYHPDKNPGNEEANKKFAEISNAYEVLSDSEKRNIYDRYGEEGLKQHAASGGRGGGMNFQDIFGSFFGGGQMEEEEKIVKGDDVVVDLDATLEDLYMGGTLKVWREKNVLKPASGKRRCNCRNEVYHKQIGPGMFQQMTEQVCEQCPNVKYVREGYFITVDIEKGMQDGQEVLFYEDGEPIIDGESGDLRFRIRTAPHDVFRREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDISTKEITKPKQVRKFKGEGMPLHMSNKKGDLYVTFEVLFPTSLTEEQKTKIKAILG* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1809 343 CDD DnaJ_C 133 330 - -
Gso19g1809 343 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Gso19g1809 343 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 8 342 IPR044713 GO:0006457|GO:0030544
Gso19g1809 343 CDD DnaJ 27 80 IPR001623 -
Gso19g1809 343 Gene3D DnaJ domain 23 126 IPR036869 -
Gso19g1809 343 SUPERFAMILY HSP40/DnaJ peptide-binding domain 251 336 IPR008971 GO:0006457|GO:0051082
Gso19g1809 343 SUPERFAMILY HSP40/DnaJ peptide-binding domain 130 255 IPR008971 GO:0006457|GO:0051082
Gso19g1809 343 SMART dnaj_3 25 83 IPR001623 -
Gso19g1809 343 Gene3D - 127 248 - -
Gso19g1809 343 PANTHER BNAA09G39960D PROTEIN 8 342 - -
Gso19g1809 343 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Gso19g1809 343 Pfam DnaJ C terminal domain 136 327 IPR002939 -
Gso19g1809 343 Gene3D - 249 327 - -
Gso19g1809 343 PRINTS DnaJ domain signature 28 46 IPR001623 -
Gso19g1809 343 PRINTS DnaJ domain signature 46 61 IPR001623 -
Gso19g1809 343 PRINTS DnaJ domain signature 63 83 IPR001623 -
Gso19g1809 343 PRINTS DnaJ domain signature 83 102 IPR001623 -
Gso19g1809 343 SUPERFAMILY Chaperone J-domain 24 121 IPR036869 -
Gso19g1809 343 Pfam DnaJ domain 27 88 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1809 Gso-Chr19 46815243 46819565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1809 42 88 Miscellaneous Gene Families AT5G49580 57.447 2.30e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1809 K09517 - gmx:100807885 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1809 19 46815243 46819565 Gso3g1844 3 44050578 44055060 GST