Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso3g1836 | ATGTTGCGGATAACGAGATTCTCGGGGTTTTTCTCCGCCGCAATGTTCGTGACTGTTCTTGTTATTCTCTCCCCCTCCTTCCAATCCGAAGCCATTCGATCCTCCCACCGATTTTCCTTCCGGAAAGCCCCTCCTTTCCGCAATGCCGCCGAATGCGCTTCTGTTTCCGGCCAAACCACCACCGTCTGCGACCCTTCCTTGGTCCACGTGGCCATAACCCTCGACGTCGACTACCTCCGCGGCTCAATCGCCGCCGTGCACTCCATCCTCCACAACTCCCTCTGTCCGGAGAACATCTTCTTCCATTTCCTCGTCTCCGACACCAACCTCCAAACCCTAGTTGAGTCCACGTTCCCAAACCTGAAATTCAACATCTATTTCTTCGATCCGAACGTCGTCGCTCACTTGATCTCTTCCTCCGTGCGGCAGGCGCTGGAGCAGCCTCTCAATTACGCGAGAAATTACCTCGTTGACCTTCTGGAGAGTTGCGTGGAGAGGGTGATTTACTTGGACTCCGATCTGGTGGTAGTGGATGACGTGGCGAAACTGTGGAGCGCGAGTCTGGACTCGCGTGCCATCGGCGCGCCGGAGTACTGCCACGCGAACTTCACCAAGTATTTCACGGCGGGGTTCTGGTCTGAGTCGAGGTTGTCGGGGACGTTCGCGCAGCGGAGGGCGTGCTACTTCAACACGGGGGTGATGGTGATGGATCTGGTGAAGTGGAGGAAGGAAGGATACACGAAGAGAATTGAGCGTTGGATGGAGATTCAGAAGAGTGATAGGATCTATGAGCTTGGTTCTCTGCCGCCGTTTTTGCTGGTGTTCGCGGGACACGTGGCACCCATTGAGCACCGGTGGAACCAGCACGGGTTGGGCGGGGATAACGTGAAGGGTAGTTGCCGTGACTTGCACCCTGGTCCGGTTAGTTTGTTGCATTGGTCCGGTAGCGGTAAGCCATGGCTCCGTTTAAGCTCCAAACGGCCTTGCCCTCTGGATTCTCTATGGGCTCCTTTTGACTTGTATACACACCCATCGTCTTAA | 1041 | 0.5552 | MLRITRFSGFFSAAMFVTVLVILSPSFQSEAIRSSHRFSFRKAPPFRNAAECASVSGQTTTVCDPSLVHVAITLDVDYLRGSIAAVHSILHNSLCPENIFFHFLVSDTNLQTLVESTFPNLKFNIYFFDPNVVAHLISSSVRQALEQPLNYARNYLVDLLESCVERVIYLDSDLVVVDDVAKLWSASLDSRAIGAPEYCHANFTKYFTAGFWSESRLSGTFAQRRACYFNTGVMVMDLVKWRKEGYTKRIERWMEIQKSDRIYELGSLPPFLLVFAGHVAPIEHRWNQHGLGGDNVKGSCRDLHPGPVSLLHWSGSGKPWLRLSSKRPCPLDSLWAPFDLYTHPSS* | 347 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso3g1836 | 346 | PANTHER | GALACTURONOSYLTRANSFERASE-LIKE 6-RELATED | 6 | 343 | - | - | |
| Gso3g1836 | 346 | Pfam | Glycosyl transferase family 8 | 69 | 322 | IPR002495 | GO:0016757 | |
| Gso3g1836 | 346 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 68 | 343 | IPR029044 | - | |
| Gso3g1836 | 346 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 69 | 328 | IPR029044 | - | |
| Gso3g1836 | 346 | PANTHER | GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN | 6 | 343 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso3g1836 | Gso-Chr3 | 44008996 | 44010530 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso3g1836 | 1 | 343 | Glycosyltransferase | AT3G62660 | 71.823 | 0.0 | 530 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso3g1836 | - | - | gmx:100798124 | 704.516 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gso19g1802 | 19 | 46761070 | 46762721 | Gso3g1836 | 3 | 44008996 | 44010530 | GST | |
| Gso3g1836 | 3 | 44008996 | 44010530 | Gso2g0132 | 2 | 1346171 | 1350602 | PCT | |
| Gso3g1836 | 3 | 44008996 | 44010530 | Gso10g0138 | 10 | 1439432 | 1441251 | PCT | |
| Gso2g0132 | 2 | 1346171 | 1350602 | Gso3g1836 | 3 | 44008996 | 44010530 | PCT | |
| Gso10g0138 | 10 | 1439432 | 1441251 | Gso3g1836 | 3 | 44008996 | 44010530 | PCT |