Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1800 ATGGTCTTCTTCTCTTCCTCCGCAACTCTAACCTACAGAAACCCAACTTCTGTTCATATGGAAACCAGTGCGGCCATGGATGTCGAGGACCAACCTTCACCCAACTCCAACAACGTTAAACGCTTCGGCCTTAAAAACTCTATCCAAACCAATTTCGGTGATGACTATGTTTTCCAAATCGTCCCAAAGGAAGATTGGAGTGCAATGGCGGTGTCACTGTCAACGAACACAGTGAAACTCTATTCACCTGTGGCGGGTCAGTATTTAGGAGAGTTCAAGGGTCACTCTGAAACCGTCAATCAGATTTCGTTTTCGGGTCCTTCAAATCCCCATATTTTGTGTTCGTGTTCTTCTGATGGCACCATTAGAGCTTGGGACGCTCGGACATTTCAGCAGGTTTCTTCTATCAATGCTGGTCCTTCTCAGGAGGTTTTCAGCTTCTGTATGGGAGGGACTAGTGGAAATTTAGTTGCCGCCGGGTGTAAATCGCAGGTACTGTTCTGGGATTGGAGAAATATGAAGCAAGTTGCATGCCTGGTGGACTCTCATGTGGATGATGTCACTCAGGTTCATTTTGTCCCTAATGAACGAGGCAAGCTGATTTCTGCTTCCGTAGATGGTTTGATCTGCACATTTGATACTACTGGAGATATCAATGATGATGATCATCTAGAATCAGTGATTAATATGGGGACTTCAATTGCAAAGGTGGGGATTTTTGGAGAGACTTTCCAGAAGCTTTGGTGTTTAACACATATTGAAACCCTGGGTATCTGGAACTGGAAAGATGGTAGCAATGAAGGAAACTTCTTAGATGCTCGTACTTTAGCTTCTGAAAGTTGGAATTTGGATCATGTTGACTACTTCATTGATTGCCACTACTCCAGAGAAGCTGAAAAACTATGGGTGATTGGAGGCACTAATGCTGGTACTATGGGCTACTTTCCTGTAAATTACAAAGGAGTGGCAACGATTGGAGCTGCAGAAGCAATTCTTGAAGGTGGCCACACAAGTGTTATTAGGAGTGTTTTACCCATGTCAACAATTCCTAGTGGACCTACTAATAGTCCTAGCCAAGGCATTTTCGGTTGGACGGGTGGGGAAGATGGTCGGCTATGTTGTTGGCTCTCTGATGATTCCTCTGAATCAAATCAATCCTGGATTTCAAGCACATTGACTATGAAGGCAGAAAGAACTCACAAGAAAAACCGTCATCACCCCTACTAA 1227 0.4417 MVFFSSSATLTYRNPTSVHMETSAAMDVEDQPSPNSNNVKRFGLKNSIQTNFGDDYVFQIVPKEDWSAMAVSLSTNTVKLYSPVAGQYLGEFKGHSETVNQISFSGPSNPHILCSCSSDGTIRAWDARTFQQVSSINAGPSQEVFSFCMGGTSGNLVAAGCKSQVLFWDWRNMKQVACLVDSHVDDVTQVHFVPNERGKLISASVDGLICTFDTTGDINDDDHLESVINMGTSIAKVGIFGETFQKLWCLTHIETLGIWNWKDGSNEGNFLDARTLASESWNLDHVDYFIDCHYSREAEKLWVIGGTNAGTMGYFPVNYKGVATIGAAEAILEGGHTSVIRSVLPMSTIPSGPTNSPSQGIFGWTGGEDGRLCCWLSDDSSESNQSWISSTLTMKAERTHKKNRHHPY* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1800 408 SUPERFAMILY WD40 repeat-like 57 344 IPR036322 GO:0005515
Gso3g1800 408 Gene3D - 143 404 IPR015943 GO:0005515
Gso3g1800 408 Pfam WD domain, G-beta repeat 86 126 IPR001680 GO:0005515
Gso3g1800 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 92 135 IPR001680 GO:0005515
Gso3g1800 408 PANTHER UNCHARACTERIZED 40 408 IPR039328 -
Gso3g1800 408 Gene3D - 57 142 IPR015943 GO:0005515
Gso3g1800 408 ProSitePatterns Trp-Asp (WD) repeats signature. 113 127 IPR019775 -
Gso3g1800 408 SMART WD40_4 172 213 IPR001680 GO:0005515
Gso3g1800 408 SMART WD40_4 85 126 IPR001680 GO:0005515
Gso3g1800 408 SMART WD40_4 129 169 IPR001680 GO:0005515
Gso3g1800 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 92 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1800 Gso-Chr3 43718672 43722599 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1800 K24758 - gmx:100787377 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1766 19 46459805 46464044 Gso3g1800 3 43718672 43722599 GST