Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1766 ATGGAAACCAGTGCGGCCATGGATGTCGAGGAGCAACCTTCACCCAACGCAAGCGACGTTAAACGCTTCGGCCTTAAAAACTCTATTCAAACCAACTTCGGCGACGACTATGTTTTCCAAATCGTCCCAAACGATGATTGGAGTGCAATGGCGGTGTCACTGTCAACGAACGCAGTGAAACTGTATTCACCTGTGGCGGGTCAGTATTATGGAGAATGCAAGGGTCACTCTGAAACCATCAATCAGATTTTGTTTTCGGGTCCTTCAAATCCCCATGTTTTGTGTTCCTGTTCTTCTGATGGCACCATTAGAGCTTGGGACATAAGGACTTTTCAGCAGGTTTCTTCCATCAATGCCGGTCCTTCTCAAGAGGTTTTCAGCTTCTGTATTGGAGGGACTGGTGGAAATTTAGTAGCCGCCGGGTGTAAATCGCAGATACTGTTCTGGGATTGGAGAAATATGAAGCAAGTTGCATGCCTGGAGGACTCTCATGTGGATGATGTCACTCAGGTTCATTTTGTCCCTAATGAACAAGGCAAGCTGATTTCTGCTTCAGTAGATGGGTTGATCTGCACATTTGATGCTACTGGAGATATCAATGATGATGATCATCTAGAATCAGTGATTAACATGGGGACTTCAATTGCAAAGGTGGGGATTTTTGGAGAGAATTATCAGAAGCTTTGGTGCTTAACACATATTGAAACCCTGGGTATCTGGAACTGGAAAGATGGTAGAAATGAAGGAAACTTCTCAGATGCTCGTACTATAGCTTCTGAAAGTTGGAACTTGGATCATGTTGACTATTTCATTGATTGCCACTATTCCAGAGAAGCTGAAAAACTATGGGTGATTGGTGGCACTAATACTGGTACTATGGGCTACTTTCCTGTAAATTACGAAGGAGTGGCTACAATTGGAGCTGCAGAAGCAATTCTTGAAGGAGGCCACGCAAGTGTTATTAGGAGTGTTTTACCCATGTCAACAATTCCTAGTGGACCTACTAATAGTCCTAGCCAAGGCATTTTCGGATGGTCGGGTGGAGAAGATGGTCGGCTGTGTTGTTGGCTCTCTGATGATTCCTCTGAATCAAATCAATCTTGGATTTCAAGCACTTTGACTATGAAGCCAGAAAGAACATGTAAGAAACACCGTCATCACCCCTACTAG 1170 0.4419 METSAAMDVEEQPSPNASDVKRFGLKNSIQTNFGDDYVFQIVPNDDWSAMAVSLSTNAVKLYSPVAGQYYGECKGHSETINQILFSGPSNPHVLCSCSSDGTIRAWDIRTFQQVSSINAGPSQEVFSFCIGGTGGNLVAAGCKSQILFWDWRNMKQVACLEDSHVDDVTQVHFVPNEQGKLISASVDGLICTFDATGDINDDDHLESVINMGTSIAKVGIFGENYQKLWCLTHIETLGIWNWKDGRNEGNFSDARTIASESWNLDHVDYFIDCHYSREAEKLWVIGGTNTGTMGYFPVNYEGVATIGAAEAILEGGHASVIRSVLPMSTIPSGPTNSPSQGIFGWSGGEDGRLCCWLSDDSSESNQSWISSTLTMKPERTCKKHRHHPY* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1766 389 Pfam WD domain, G-beta repeat 70 107 IPR001680 GO:0005515
Gso19g1766 389 Gene3D - 7 217 IPR015943 GO:0005515
Gso19g1766 389 SUPERFAMILY WD40 repeat-like 28 252 IPR036322 GO:0005515
Gso19g1766 389 MobiDBLite consensus disorder prediction 1 20 - -
Gso19g1766 389 SMART WD40_4 66 107 IPR001680 GO:0005515
Gso19g1766 389 SMART WD40_4 153 194 IPR001680 GO:0005515
Gso19g1766 389 SMART WD40_4 110 150 IPR001680 GO:0005515
Gso19g1766 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 73 116 IPR001680 GO:0005515
Gso19g1766 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 73 110 - -
Gso19g1766 389 PANTHER UNCHARACTERIZED 21 389 IPR039328 -
Gso19g1766 389 ProSitePatterns Trp-Asp (WD) repeats signature. 94 108 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1766 Gso-Chr19 46459805 46464044 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1766 K24758 - gmx:100794786 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1766 19 46459805 46464044 Gso3g1800 3 43718672 43722599 GST