Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1779 ATGTACGTGCCTTCCGCTTCTCTATCCGGTTACTCTGTGGCGATGAACAGCTTAACGGCGAGTTTCACAGCTCGAATATGCGCCACGCGCCGCGACCTACTACTCCCTATACGACACCGTTCCCTTCATCCTTTCACTACCAGACGCGTCGCCACCAAACTCACTCCTCCAAGAATCGTTTGCATGGCGGAACCTTATCTGATAACGAAGCTTGAGTCCGCCGAGAAAACGTGGAAAGAGTTATCGGTCAAGCTTGCTGATCCAGACGTAGTTTCTGATCCAAAGGAGTACCAGAAGTTAGCACAATCAGTTTCAGAGCTTGATGAGGTTGTGTCCACGTATAGGAGATTTAAAGACTGTGAGAAGGTTCTAGAAGAAACCAAAGCTTTAGCGAAGGATGATGGCAACGATGAGGATATGGTGGAAATGATATCTTTTGAAATTGACACTTTGTCCAAGCAACTCGCGGAGCTTGAGGAAAAAATTAAGGTGTTACTGCTTCCCAGTGATCCTATGGATGCTAGAAACATATTGCTTGAAGTACGAGCAGGCACTGGTGGTGACGAGGCCGGAATATGGGCTGGTGATCTTGTTCGAATGTATGAAAGATATAGTGAAAGGAATTCTTGGAAGTATTCTCTTGTCTCAAGCTCTGCGGCAGAAAAAGGAGGATACAAAACTTATGTGATGGAAATAAAGGGAAATCGTGTTTACAGTAAATTGAAATATGAATCTGGTGTCCACCGAGTTCAACGGGTTCCCCTAACAGAAACTCAGGGCCGGGTACATACTTCTACTGCAACAGTGGCCATCATGCCAGAGGCTGATGAAGTTGAAGTCGTAATTGACCCAAAAGATATTGAACTGACAACGGCACGTTCTGGGGGTGCTGGAGGCCAGAATGTTAACAAGGTTGAAACAGCCATTGATCTCTTCCATAAACCAACGGGAATCCGTATCTTTTGTACTGAAGAAAGGACACAACTTAAGAACAGGAATCGCGCTTTTCAGTTGCTCCGAGCAAAACTATATGAGATTAAGGTAAGGGAGCAACAGGAGTCATTACGAAATCAAAGGAAATTACAGGTCGGTACAGGTGCACGTTCAGAAAAAATTCGAACATACAATTATAAGGACAACAGGGTTACTGACCACAGATTGAAGATAAACTATGAGCTCACCTCTTTTCTTGATGGTGATATAGAAGATGCTGTTCAGTCTTGTGTTACAATGGAGCAAAAGGAACTTCTGGAAGAACTTGCTGAATCTGTGGGTGCTCCGGCTGGCTGA 1290 0.4473 MYVPSASLSGYSVAMNSLTASFTARICATRRDLLLPIRHRSLHPFTTRRVATKLTPPRIVCMAEPYLITKLESAEKTWKELSVKLADPDVVSDPKEYQKLAQSVSELDEVVSTYRRFKDCEKVLEETKALAKDDGNDEDMVEMISFEIDTLSKQLAELEEKIKVLLLPSDPMDARNILLEVRAGTGGDEAGIWAGDLVRMYERYSERNSWKYSLVSSSAAEKGGYKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLKNRNRAFQLLRAKLYEIKVREQQESLRNQRKLQVGTGARSEKIRTYNYKDNRVTDHRLKINYELTSFLDGDIEDAVQSCVTMEQKELLEELAESVGAPAG* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1779 429 PANTHER LD18447P 37 427 - -
Gso3g1779 429 TIGRFAM prfA: peptide chain release factor 1 63 422 IPR004373 GO:0006415|GO:0016149
Gso3g1779 429 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 293 309 IPR000352 GO:0003747|GO:0006415
Gso3g1779 429 Gene3D - 179 405 - -
Gso3g1779 429 Pfam PCRF domain 75 269 IPR005139 GO:0006415
Gso3g1779 429 Gene3D - 275 370 - -
Gso3g1779 429 PANTHER PEPTIDE CHAIN RELEASE FACTOR APG3, CHLOROPLASTIC 37 427 - -
Gso3g1779 429 SUPERFAMILY Release factor 76 417 IPR045853 -
Gso3g1779 429 SMART PCRF_a_2 129 244 IPR005139 GO:0006415
Gso3g1779 429 Pfam RF-1 domain 276 386 IPR000352 GO:0003747|GO:0006415
Gso3g1779 429 Hamap Peptide chain release factor 1 [prfA]. 67 421 IPR004373 GO:0006415|GO:0016149
Gso3g1779 429 Gene3D - 61 171 - -
Gso3g1779 429 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1779 Gso-Chr3 43550920 43556457 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1779 K02835 - gmx:100777225 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1745 19 46312039 46318578 Gso3g1779 3 43550920 43556457 GST