Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1745 ATGTACGTGCCTTCCGCTTCTCTATCCGGTTACTCTGTGGCCATGAATAGCTTAACGGCGAGTTTCACAGCTCGAATATGCGCCACGCGCCGCGACCTACTCCATATACGACACCGTTCCTTTCATCCTCTCACTACTCGACGCGTTGCCACCAAACTCACTCCTCCAAGAATCGTTTGCATGGCGGAACCTTATCTGATAACGAAGCTTGAGTCCGCCGAGAAAACGTGGCAAGAGTTATCGATGAAATTTCAGGTCAAGCTTGCTGATCCAGACGTAGTTTCTGATCCAAAGGAGTACCAGAAGTTAGCACAATCAGTTGCAGAACTTGATGAGGTTGTGTCCACTTATAGGAGATTTAAAGACTGTGAGAAGGTTCTAGAAGAAACCAAAGCTTTAGCAAAGGATGATGGCAACGATGAGGATATGGTGGAAATGATATCTTTTGAAATTGACTCTTTGTCTAAGCAACTTGCAGAGCTTGAGGAAAAGCTTAAGGTGTTACTGCTTCCCAGTGATCCTATGGATGCTAAAAACATATTGCTTGAAGTACGAGCAGGCACTGGTGGTGACGAGGCCGGAATATGGGCTGGTGATCTTGTTCGAATGTATGAAAGATATAGTGAAAGGAATTCTTGGAAGTATTCTCTTGTCTCAAGCTCTGCGGCAGAAAAAGGAGGATACAAAACTTATGTGATGGAGATAAAAGGAAATCGTGTTTACAGTAAATTGAAATATGAATCTGGTGTCCACCGAGTTCAACGTGTTCCCCTAACAGAAACACAGGGCCGGGTGCATACTTCAACCGCAACAGTGGCCATCATGCCAGAGGCTGATGAAGTTGAAGTCATAATTGACCCAAAAGATATTGAACTGACAACAGCACGTTCTGGGGGTGCTGGAGGCCAGAATGTTAACAAGGTTGAAACAGCCATTGATCTCTTCCATAAACCAACGGGAATCCGCATCTTTTGTACTGAAGAAAGAACACAACTTAAGAACAAGAATCGTGCTTTTCAGTTGCTCCGAGCAAAACTATATGAGATGAAGATAAGGGAGCAGCAAGAGTCATTACGAAATCAAAGGAAATTACAGGTCGGTACAGGTGCACGGTCAGAAAAAATCCGAACATACAATTATAAGGACAACAGGGTTACTGACCACAGATTGAAGATAAACTATGAGCTCACCTCTTTTCTTGATGGTGATATAGAAGATGCTGTTCAGTCTTGTGTTACAATGGAGCAAAAGGAACTTCTGGAAGAACTTGCTGAATCTGTGGGTGCTCCGGCTGGCTGA 1299 0.4403 MYVPSASLSGYSVAMNSLTASFTARICATRRDLLHIRHRSFHPLTTRRVATKLTPPRIVCMAEPYLITKLESAEKTWQELSMKFQVKLADPDVVSDPKEYQKLAQSVAELDEVVSTYRRFKDCEKVLEETKALAKDDGNDEDMVEMISFEIDSLSKQLAELEEKLKVLLLPSDPMDAKNILLEVRAGTGGDEAGIWAGDLVRMYERYSERNSWKYSLVSSSAAEKGGYKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEADEVEVIIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLKNKNRAFQLLRAKLYEMKIREQQESLRNQRKLQVGTGARSEKIRTYNYKDNRVTDHRLKINYELTSFLDGDIEDAVQSCVTMEQKELLEELAESVGAPAG* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1745 432 PANTHER LD18447P 35 430 - -
Gso19g1745 432 Pfam PCRF domain 83 272 IPR005139 GO:0006415
Gso19g1745 432 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 296 312 IPR000352 GO:0003747|GO:0006415
Gso19g1745 432 TIGRFAM prfA: peptide chain release factor 1 62 425 IPR004373 GO:0006415|GO:0016149
Gso19g1745 432 Gene3D - 287 348 - -
Gso19g1745 432 Gene3D - 349 430 - -
Gso19g1745 432 Gene3D - 176 286 - -
Gso19g1745 432 Pfam RF-1 domain 279 389 IPR000352 GO:0003747|GO:0006415
Gso19g1745 432 Hamap Peptide chain release factor 1 [prfA]. 66 424 IPR004373 GO:0006415|GO:0016149
Gso19g1745 432 Coils Coil 144 164 - -
Gso19g1745 432 SMART PCRF_a_2 132 247 IPR005139 GO:0006415
Gso19g1745 432 SUPERFAMILY Release factor 82 420 IPR045853 -
Gso19g1745 432 Coils Coil 344 364 - -
Gso19g1745 432 Gene3D - 60 174 - -
Gso19g1745 432 PANTHER PEPTIDE CHAIN RELEASE FACTOR APG3, CHLOROPLASTIC 35 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1745 Gso-Chr19 46312039 46318578 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1745 K02835 - gmx:100805037 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1745 19 46312039 46318578 Gso3g1779 3 43550920 43556457 GST