Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1744 ATGGCGGTTTCTGAAGAAGAATGCTCTTCTGCGAATTCAGGTTCAGGTCCCTCTTCTTCGTCTTCCTCCGCCTCGGCGCGCTACTACCTCTCCAAGTGCGTTCTCAGAGGCAGCGTCGTTCTTCAGGTTCTCCACGCTCACATCCGTTCTCCCTCCTCAAACGACGTCATTTTCGGCAAGGAGACATCTATTGAATTGGTGGTTATTGACGAGGATGGGAATGTGCAATCTGTGTGTGATCAGCCTGTCTTTGGCACCGTCAAAGATCTTGCCATATTGCCCTGGAATGAGAAATTTCGTGTCGCACGTGATCCGCAGCTGTGGGGTAAAGACCTTTTGGTTGCTACATCTGATTCTGGGAAGTTGTCGTTGCTCACATTTTGCAATGAAATGCACAGGTTTATTCCTGTAACACATATTCAGCTATCTAATCCTGGAAACCAAATTGATCTTCCTGGAAGAAAGTTAGCAGTTGATTCCAGTGGTTGTTTTATTGCTTCCAGTGCATACGAAGATCGGCTGGCTTTGTTTTCTTTGTCAATGTCTAGTGGTGATATCATTGATGAGAGAATTGTATATCCTTCTGAAAATGAAGGGACTGCAAGTACTTCCAGAAGCATCCAGAGAATCGGTATACGTGGTACTATTTGGAGCATCTGTTTCATTTCACAAGATTCCAGACAACCAAGCAAGGAGCATAATCCTGTACTAGCTGTTATTATAAATAGGAGGGGAGCGCTTCTAAATGAACTGCTATTATTAGAATGGAATGTTAAAGCACATAAAATATTTGTTATTTCTCAGTATGTTGAAGCTGGGCCTCTAGCACATGACATTGTTGAAGTTCCCAACTCCGGGGGACTTGCATTTCTATTTAGGGCTGGTGATGTTCTCTTAATGGATCTTAGAGATCATCGCAACCCATCCTGTGTCTGTAAGACTAACTTGAACTTTTTACCCAATGCCATGGAAGAGCAGACTTATGTGGAAGAGTCTTGTAAATTACATGATGTTGATGATGAACGCTTTAGTGTTGCTGCCTGTGCTTTGTTGGAGCTGAGCGATTATGATCCTATGTGCATAGACAGTGACAATGGTGGTGCCAATTCAGGTTACAAATACATATGCTCGTGGAGTTGGGAACCTGAAAATAATAGAGATCCTAGGATGATCTTCTGTGTAGATACTGGAGAATTTTTTATGATTGAAGTTCTTTTTGATTCTGAAGGCCCTAAAGTTAATCTGTCTGAGTGTCTCTATAAAGGTCTACCCTGTAAAGCACTTTTGTGGGTTGAAAGTGGATATCTAGCTGCCCTTGTGGAAATGGGGGATGGTATGGTCCTGAAATTGGAAGATGGAAGGCTGTGCTATATAAACCCTATTCAAAACATTGCACCAATCTTGGATATGGAAGTTGTAGATTATCATGATGAGAAGCAAGATCAAATGTTTGCTTGCTGTGGTGTGGCACCAGAGGGGTCATTAAGGATTATTCGAAATGGTATTAATGTGGAAAATCTACATAGGACTGCTTCTATATATCAAGGGGTAACTGGTACTTGGACGGTCCGAATGAGAGTTACGGATTCACACCATTCTTTTCTGGTTCTATCATTTGTTGAGGAAACCAGAATATTGTCAGTTGGCTTAAGTTTTACTGATGTGACTGATTCAGTTGGTTTCCAACCTAATGTTTGTACTTTGGCATGCGGCCTTGTGACTGATGGTTTGCTTGTCCAGATCCACAAATCTACTGTTAAGCTTTGTTTGCCCACTAAGGCTGCTCATTCTGAAGGTATCCCTTTGTCCTCTCCTATTTGCACATCTTGGTCTCCAGACAATGTGAGTATTAGTTTGGGGGCAGTTGGGCATAATTTCATAGTTGTGTCAACCTCTAACCCATGCTTTCTGTTTATCCTTGGGGTTAGATTGCTATCAGCTTATCAATATGAAATTTATGAAATGCAACATTTGGTACTGCAGAATGAGTTATCATGTATTTCCATCCCTGGACAAGAAATTGAGCAAAAACAATCAAATTCATCCATTTCAGCTAATAATAGTAGCATCTCTTCTTTTCAAATTCAAAGTGGAGTGGACATCAATAAAACCTTTGTTATTGGCACACATAGGCCTTCTGTGGAAATTTGGTATTTTGCACCAGGTGGAGGAATTACTGTAGTTGCTTGTGGGACAATTTCATTAACGAATACAGTAGGGACTGCCATAAGTGGTTGTGTACCCCAAGATGTGCGGCTTGTATTTGTTGGTAAGTATTATGTTCTTGCTGGATTGAGGAATGGAATGCTCCTTCGCTTTGAGTGGCCGGCGGAACCATGTCCTTCATCATCAATAAACATAGTGGATACTGCTTTATCTTCTATAAATTTGGTAAATTCTGTGACTAATGCTTTTGACAAGAGAAATGACTTTCCTTCCATGCTTCAATTGATTGCCATTAGACGAATTGGCATTACTCCAGTTTTCTTGGTGCCCCTGGGTGATACACTGGATGCCGATATAATTACTCTTAGTGATAGGCCTTGGTTGTTGCATAGTGCAAGACACAGCCTGTCCTATTCTTCTATCTCATTTCAACCATCCACGCATGTAACTCCTGTTTGCTCTGTTGAGTGTCCAAAAGGAATACTATTTGTTGCAGAAAACAGTTTACATCTGGTGGAGATGGTCCACAGCAAGAGACTTAATATGCAGAAGTTTCATTTAGAGGGCACTCCACGGAAGGTCTTGTATCATGATGAAAGCAAGATGTTGCTTGTGATGAGGACTGAACTGAATTGTGGTACATGTTTGTCTGACATATGTATTATGGATCCCCTAAGTGGGTCAGTACTGTCGTCTTTTAGACTTGAACTTGGAGAAACAGGAAAATCCATGGAATTAGTAAGAGTTGGAAGTGAGCAGGTGCTTGTTGTTGGAACTAGTCTGTCTTCGGGTCCACACACAATGGCCACTGGTGAAGCTGAAAGTTGCAAGGGTCGTCTTCTTGTTCTTTGTCTTGATCATGTGCAAAATTCAGATAGTGGTTCAGTGACGTTCTGTTCAAAGGCAGGGTCATCATCTCAAAAAACTTCACCATTCCGTGAAATTGTTACATATGCTCCTGAACAGTTATCGAGCAGTAGCCTTGGCAGCAGTCCAGATGATAATAGTTCTGATGGCATCAAACTCGACGAAAATGAAGTATGGCAGTTCCGATTAACTTTTGCAACTAAATGGCCGGGAGTTGTACTTAAAATCTGTCCTTATCTTGATCGTTACTTCTTGGCAACTGCTGGCAATGCTTTCTATGTTTGTGGTTTCCCTAATGACAATCCTCAAAGAGTGAGAAGGTATGCTATGGGAAGGGCGCGCTTCATGATAACATCTTTGACTGCACATTTTACTAGAATTGCAGTTGGTGATTGCCGTGATGGTATCCTTCTATATTCTTATCATGAGGAAGCAAAAAAATTGGAGCTACTTTACAATGACCCATCACTTAGGTTAGTTGCTGATTGCATTCTCATGGATGCTGATACAGCTGTTGTTTCGGATCGTAAAGGAAGCATTGCTGTTTTATGTTCAGATCACTTGGAAGACAATGCAGGTGCACAATGCAACATGGCACTAAGCTGTGCTTATTTCATGGCTGAGATAGCCATGAGCATCAAGAAGGGCTCATATTCATACAGACTTCCAGCTGATGATGTTTTGCAAGGTGGAAATGGCCCCAAGACAAATGTTGATTCATTACAAAATACTATTATTGCCACTACCCTGTTAGGAAGCATAATGATCTTCATCCCTTTATCAAGGGAAGAATATGAGCTCTTAGAAGCAGTGCAAGCAAGACTTGTTGTCCATCATTTGACAGCACCTGTTCTAGGAAATGATCATAATGAGTTTCGCAGTCGCGAAAATCGGGTTGGAGTACCCAAGATACTTGATGGTGACATGTTGACCCAGTTTCTGGAGCTGACAAGTATGCAGCAAAAGATGATTTTGTCTTTGGAGCTACCGGATATGGTAAAACCAAGTTTGAAGCCACTCCTACCCTCCCATGTTTCTGTAAATCAGAACGCGGAACATGCATATGCAGTTCTAAACAATATTGTCCGTCAACGGTTGCGTGTCTGCTTCTCAAAGTGTTGTCAGATATAG 4164 0.4162 MAVSEEECSSANSGSGPSSSSSSASARYYLSKCVLRGSVVLQVLHAHIRSPSSNDVIFGKETSIELVVIDEDGNVQSVCDQPVFGTVKDLAILPWNEKFRVARDPQLWGKDLLVATSDSGKLSLLTFCNEMHRFIPVTHIQLSNPGNQIDLPGRKLAVDSSGCFIASSAYEDRLALFSLSMSSGDIIDERIVYPSENEGTASTSRSIQRIGIRGTIWSICFISQDSRQPSKEHNPVLAVIINRRGALLNELLLLEWNVKAHKIFVISQYVEAGPLAHDIVEVPNSGGLAFLFRAGDVLLMDLRDHRNPSCVCKTNLNFLPNAMEEQTYVEESCKLHDVDDERFSVAACALLELSDYDPMCIDSDNGGANSGYKYICSWSWEPENNRDPRMIFCVDTGEFFMIEVLFDSEGPKVNLSECLYKGLPCKALLWVESGYLAALVEMGDGMVLKLEDGRLCYINPIQNIAPILDMEVVDYHDEKQDQMFACCGVAPEGSLRIIRNGINVENLHRTASIYQGVTGTWTVRMRVTDSHHSFLVLSFVEETRILSVGLSFTDVTDSVGFQPNVCTLACGLVTDGLLVQIHKSTVKLCLPTKAAHSEGIPLSSPICTSWSPDNVSISLGAVGHNFIVVSTSNPCFLFILGVRLLSAYQYEIYEMQHLVLQNELSCISIPGQEIEQKQSNSSISANNSSISSFQIQSGVDINKTFVIGTHRPSVEIWYFAPGGGITVVACGTISLTNTVGTAISGCVPQDVRLVFVGKYYVLAGLRNGMLLRFEWPAEPCPSSSINIVDTALSSINLVNSVTNAFDKRNDFPSMLQLIAIRRIGITPVFLVPLGDTLDADIITLSDRPWLLHSARHSLSYSSISFQPSTHVTPVCSVECPKGILFVAENSLHLVEMVHSKRLNMQKFHLEGTPRKVLYHDESKMLLVMRTELNCGTCLSDICIMDPLSGSVLSSFRLELGETGKSMELVRVGSEQVLVVGTSLSSGPHTMATGEAESCKGRLLVLCLDHVQNSDSGSVTFCSKAGSSSQKTSPFREIVTYAPEQLSSSSLGSSPDDNSSDGIKLDENEVWQFRLTFATKWPGVVLKICPYLDRYFLATAGNAFYVCGFPNDNPQRVRRYAMGRARFMITSLTAHFTRIAVGDCRDGILLYSYHEEAKKLELLYNDPSLRLVADCILMDADTAVVSDRKGSIAVLCSDHLEDNAGAQCNMALSCAYFMAEIAMSIKKGSYSYRLPADDVLQGGNGPKTNVDSLQNTIIATTLLGSIMIFIPLSREEYELLEAVQARLVVHHLTAPVLGNDHNEFRSRENRVGVPKILDGDMLTQFLELTSMQQKMILSLELPDMVKPSLKPLLPSHVSVNQNAEHAYAVLNNIVRQRLRVCFSKCCQI* 1388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1744 1387 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 111 669 IPR018846 -
Gso3g1744 1387 Pfam CPSF A subunit region 939 1326 IPR004871 GO:0003676|GO:0005634
Gso3g1744 1387 Gene3D - 502 901 IPR015943 GO:0005515
Gso3g1744 1387 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR (CPSF) A SUBUNIT PROTEIN 22 1362 - -
Gso3g1744 1387 MobiDBLite consensus disorder prediction 1 23 - -
Gso3g1744 1387 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 22 1362 - -
Gso3g1744 1387 Gene3D - 39 464 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1744 Gso-Chr3 43261393 43275981 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1744 K12830 - gmx:100806799 2707.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1744 3 43261393 43275981 Gso3g1744 3 43261393 43275981 ECH
Gso19g1714 19 46024326 46040613 Gso3g1744 3 43261393 43275981 GST