Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1741 ATGCGAAGAGCAAGAAATATGAGACCAAACATCGTTTCTGAGGCCGGGTTTCCTACTAGGATGAGCCAATGGTGGGAAAGCATTCCGTTTCTCACTTCTGCAGTGGTGGTTGTCTGTGGAGTCATTTACTTGATTTGTCTTTTGGTTGGATATGATTCCTTCTACGAGGTTTGCTTCTTGCCATCTGCGGTTGTGTCACGGTTTCAAGTTTACAGGATTTATACCTCCATTCTTTTCCATGGTTCACTGCTTCATGTTGTCTTCAACATGATGGCTTTAGTTCCCCTGGGCTCTGAGCTGGAGAGGATCATGGGCTCAGTTCGCTTGCTTTATGTCATTATTTTGGTGGCTACAAGCAATGCCATATTCCATGTTCTCATAGCACTGCTGGTGGCGCACAATCCTTTACTTACATATGATTACCTCATGAATGAGTGTGCGATAGGCTTCTCAGGAGTTCTATTTTCAATGATTGTTATAGAGACAAGCCTGAGTGGAGTTCAATCAAGGAGTGTGTTTGGATTGTTTAATGTGCCTGCCAAGTGGTATGCATTCTTTTTGTTGGTAGTGTTCCAGCTTCTCATGCAAAATGTCTCACTACTTGGACACCTTTGTGGCATTTTATCTGGGTTTGCATATACATATGGCTTGTTTAATTTCCTCATACCTGGGACATCATTTTATTCTTCCATTGAGTCCTCCTCCTGGTTTTCATCATGTGTGAGACGTCCAAAATTTATTGTTTGCACTGGTGGAAATCCTTCGGGTTATATTCCTACACATACAAGCCAAAATTCAACAACCAGTGGATTACTTTCTGGAAATGTTTGGAGGAACCTATCATCATTTATGCCTCAAAGGGAAGTGTCTGCTCAGTCAACTGAGGACAGTAGGTTCCCTGGGAGGGGAAGGACCCTTGGTGCTGTTCAAGGTCAAACTGCTTCTCATCTTCATTCAGATTCAAACCTTCAAGCTAGACTTTTGGAGGATAGCAGTCCCAATAGTCCTTTAGATTCATCCACTCCTAGTAATCCTCAACGGTTGTCCGAAGGAAGGCATTCAGTTGACAATGTAGCTACAGCAGCTGCTGGTGTTCCACAGAATCAGGGTGCAGCTGTTTCGGAAGAAGGGATTAGAAAACTTGTATCAATGGGCTTTGACAGGACGCAGGTGGAAGTGGCACTGGCAGCTGCTGATGGTGATCTCAATGTGGCAGTGGAAATACTCATGAGCCAGCAGGGTTGA 1245 0.441 MRRARNMRPNIVSEAGFPTRMSQWWESIPFLTSAVVVVCGVIYLICLLVGYDSFYEVCFLPSAVVSRFQVYRIYTSILFHGSLLHVVFNMMALVPLGSELERIMGSVRLLYVIILVATSNAIFHVLIALLVAHNPLLTYDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFNFLIPGTSFYSSIESSSWFSSCVRRPKFIVCTGGNPSGYIPTHTSQNSTTSGLLSGNVWRNLSSFMPQREVSAQSTEDSRFPGRGRTLGAVQGQTASHLHSDSNLQARLLEDSSPNSPLDSSTPSNPQRLSEGRHSVDNVATAAAGVPQNQGAAVSEEGIRKLVSMGFDRTQVEVALAAADGDLNVAVEILMSQQG* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1741 414 PANTHER RHOMBOID-LIKE PROTEIN 15 10 413 - -
Gso3g1741 414 Gene3D - 22 219 IPR035952 -
Gso3g1741 414 Gene3D - 346 414 - -
Gso3g1741 414 MobiDBLite consensus disorder prediction 288 315 - -
Gso3g1741 414 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 372 412 IPR015940 -
Gso3g1741 414 SUPERFAMILY UBA-like 367 413 IPR009060 GO:0005515
Gso3g1741 414 SMART DUF1751_2 61 163 - -
Gso3g1741 414 SMART uba_6 374 411 IPR015940 -
Gso3g1741 414 MobiDBLite consensus disorder prediction 328 352 - -
Gso3g1741 414 Pfam UBA/TS-N domain 375 409 IPR015940 -
Gso3g1741 414 PANTHER DER1-LIKE PROTEIN, DERLIN 10 413 - -
Gso3g1741 414 CDD UBA_At3g58460_like 375 410 - -
Gso3g1741 414 Pfam Rhomboid family 66 219 IPR022764 GO:0004252|GO:0016021
Gso3g1741 414 SUPERFAMILY Rhomboid-like 26 220 IPR035952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1741 Gso-Chr3 43239819 43246088 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1741 - - gmx:100805745 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1741 3 43239819 43246088 Gso3g1741 3 43239819 43246088 ECH
Gso19g1712 19 46009228 46015769 Gso3g1741 3 43239819 43246088 GST