Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1712 ATGCGAAGAGCAAGAAATATGAGACCAAACATCGTTTCTGAGGCCGGGTTGCCTACTAGGATGAGTCAATGGTGGGAAAGCATTCCGTTTCTCACTTCTGCAGTGGTGGTTGTCTGTGGAATCATTTACTTGGTTTGTCTTTTGGTTGGATATGATTCCTTCAACGAGGTTTGCTTCTTGCCGTCTGCGGTTGTTTCGCGGTTTCAAGTTTACCGGATTTATACCTCCATTCTTTTCCACGGTTCACTGCTTCATGTTGTCTTCAACATGATGGCTTTAGTTCCCTTGGGCTCTGAGCTGGAGAGGATCATGGGCTCAGTTCGCTTGCTTTATGTCATTATTTTGGTGGCTACAAGCAATGCCATATTCCATGTTCTCATAGCACTGCTGGTGGCACACAATCCTTTACTTACATATGATTACCTCATGAATGAGTGTGCGATAGGCTTCTCAGGAGTTCTGTTTTCAATGATTGTTATAGAGACAAGCCTGAGTGGAGTTCAATCGAGGAGTGTGTTTGGATTGTTTAATGTGCCTGCCAAGTGGTATGCATTCTTTTTGTTGGTAGTGTTCCAGCTTCTCATGCAAAATGTCTCACTTCTTGGGCACCTTTGTGGCATTTTATCTGGGTTTGCATATACATATGGCTTGTTTAATTTCCTCATACCTGGGACATCTTTTTATTCTTCCATTGAATCCTCCTCTTGGCTTTCATCATGTGTGAGACGTCCAAAATTTATTGTTTGCACTGGTGGAAATCCTTCGGGTTATATTCCTACACAGACAAGCCAAAATTCAACAACCAGTGGATTACTTTCTGGAAATATTTGGAGGAACCTATCATCATTTATGCCTCAAAGGGAAGTGTCTGCTCAGTCAACAGAGGATATTAGGTTCCCCGGGAGGGGAAGGACCCTTGGTGCCGTTCAAGGTCAAACTGCTTCTCATCTCCATTCAGATTCAAACCTTCAAGCTAGACTTTTGGAGGATAGCAGTCCCAATAGTCCTTTAGATTCATCCACTCCTAGTAATACTCAACAGTTGTCAGAAGGAAGGCATTCAGTTGACGATGTAGCTACAGCAGCTGCTGGTGTTCCACAGAATCAGGGTGCAGTTGTTTCGGAAGAAAGGATTAAAAAACTTGTATCAATGGGCTTTGATAGGACGCAGGTGGAAGTGGCGCTGGCTGCTGCTGATGGTGATCTCAATGTGGCAGTGGAAATACTCATGAGCCAGCAGGGTTGA 1245 0.4402 MRRARNMRPNIVSEAGLPTRMSQWWESIPFLTSAVVVVCGIIYLVCLLVGYDSFNEVCFLPSAVVSRFQVYRIYTSILFHGSLLHVVFNMMALVPLGSELERIMGSVRLLYVIILVATSNAIFHVLIALLVAHNPLLTYDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFNFLIPGTSFYSSIESSSWLSSCVRRPKFIVCTGGNPSGYIPTQTSQNSTTSGLLSGNIWRNLSSFMPQREVSAQSTEDIRFPGRGRTLGAVQGQTASHLHSDSNLQARLLEDSSPNSPLDSSTPSNTQQLSEGRHSVDDVATAAAGVPQNQGAVVSEERIKKLVSMGFDRTQVEVALAAADGDLNVAVEILMSQQG* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1712 414 MobiDBLite consensus disorder prediction 328 353 - -
Gso19g1712 414 Pfam UBA/TS-N domain 374 409 IPR015940 -
Gso19g1712 414 Pfam Rhomboid family 66 219 IPR022764 GO:0004252|GO:0016021
Gso19g1712 414 Gene3D - 333 414 - -
Gso19g1712 414 SMART DUF1751_2 61 163 - -
Gso19g1712 414 PANTHER DER1-LIKE PROTEIN, DERLIN 10 413 - -
Gso19g1712 414 Gene3D - 22 219 IPR035952 -
Gso19g1712 414 SUPERFAMILY Rhomboid-like 26 220 IPR035952 -
Gso19g1712 414 SMART uba_6 374 411 IPR015940 -
Gso19g1712 414 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 372 412 IPR015940 -
Gso19g1712 414 CDD UBA_At3g58460_like 375 410 - -
Gso19g1712 414 PANTHER RHOMBOID-LIKE PROTEIN 15 10 413 - -
Gso19g1712 414 SUPERFAMILY UBA-like 362 413 IPR009060 GO:0005515
Gso19g1712 414 MobiDBLite consensus disorder prediction 328 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1712 Gso-Chr19 46009228 46015769 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1712 - - gmx:100798661 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1712 19 46009228 46015769 Gso3g1741 3 43239819 43246088 GST