Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1679 ATGGCTATGAGGTTAGAAGGCAAGGTGGCACTAATAACCGGTGGAGCCAGTGGCATCGGCGAAGCCACCGCAAGGCTTTTCCTTTGCCACGGTGCCAAGGTCATCATCGCTGACATCCAAGACAACCTCGGACACTCCCTCTGCCAAAACCTCAACTCCTCCGACAACAACATTTCCTACGTTCACTGCGACGTCACCAACGATAACGACGTCCAAAACGCCGTCAACGCCGCCGTCTCGCGTCACGGCAAGCTCGACATCCTGTTCAGTAACGCCGGCACTGTTGGCCGTGTGAGCCCTTCCATCACGGCGCTTGACAACGCTGACTTGAAGAGGGTTTTCGAGGTGAATGTCTTCGGTGCTTTCTACGCCGCCAAACACGCGGCTAAGGTAATGATTCCTGAAAAGAGAGGGAGCATTGTGCTCACCTCAAGTGTTGCTTCGGTGACTCACGCGGTTTCGCCGCATGCATACACTGCGTCGAAGCACGCGGTGGTGGGTCTGATGAAGAACCTGTGCGTGGAACTGGGGAATCATGGAATCAGAGTTAACTGTGTTTCACCGTACGCGGTGGCCACTCCTCTGATGACACGTGGAACCAGGATGAAGAAGGAGATGGTAGAGAAAGTGTATTCTGAGGCGGGGAACCTGAAGGGAGTGGTTTTGAAGGAAGAGGATTTGGCAGAAGCAGCTCTGTTTCTGGCTAGTGATGAGTCAAAGTACGTGAGTGGGGTTAACCTAGTTGTGGATGGAGGTTACAGTGTCACCAATGTTTCTGTTAAAGAAGCTGTGAGAAAGTTTCCTGGTAAGCCCAAGTTGTAA 822 0.5268 MAMRLEGKVALITGGASGIGEATARLFLCHGAKVIIADIQDNLGHSLCQNLNSSDNNISYVHCDVTNDNDVQNAVNAAVSRHGKLDILFSNAGTVGRVSPSITALDNADLKRVFEVNVFGAFYAAKHAAKVMIPEKRGSIVLTSSVASVTHAVSPHAYTASKHAVVGLMKNLCVELGNHGIRVNCVSPYAVATPLMTRGTRMKKEMVEKVYSEAGNLKGVVLKEEDLAEAALFLASDESKYVSGVNLVVDGGYSVTNVSVKEAVRKFPGKPKL* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1679 273 CDD secoisolariciresinol-DH_like_SDR_c 4 254 IPR045309 GO:0016616
Gso3g1679 273 Pfam Enoyl-(Acyl carrier protein) reductase 14 254 - -
Gso3g1679 273 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-LIKE 2 261 - -
Gso3g1679 273 Gene3D - 1 268 - -
Gso3g1679 273 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 2 261 - -
Gso3g1679 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 IPR002347 -
Gso3g1679 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 IPR002347 -
Gso3g1679 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 IPR002347 -
Gso3g1679 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 255 IPR036291 -
Gso3g1679 273 PRINTS Glucose/ribitol dehydrogenase family signature 9 26 IPR002347 -
Gso3g1679 273 PRINTS Glucose/ribitol dehydrogenase family signature 83 94 IPR002347 -
Gso3g1679 273 PRINTS Glucose/ribitol dehydrogenase family signature 132 148 IPR002347 -
Gso3g1679 273 PRINTS Glucose/ribitol dehydrogenase family signature 158 177 IPR002347 -
Gso3g1679 273 PRINTS Glucose/ribitol dehydrogenase family signature 179 196 IPR002347 -
Gso3g1679 273 PRINTS Glucose/ribitol dehydrogenase family signature 217 237 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1679 Gso-Chr3 42669999 42671310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1679 5 260 Acyl Lipid Metabolism Gene Families AT3G55290 33.080 1.34e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1679 - - gmx:102668408 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1679 3 42669999 42671310 Gso3g1679 3 42669999 42671310 ECH
Gso19g1650 19 45419143 45420337 Gso3g1679 3 42669999 42671310 GST