Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1650 ATGCAAGCATGTTCCTCCTCAGACGCTCCACTCTCCAAGAGGTTAGATGGCAAAGTAGCACTCATAACCGGCGGAGCCAGTGGCATCGGTGAAGCCACCGCCAAGCTTTTCCTTCGCCACGGTGCCAAGGTCGTCATCGCCGACATCCAAGACAACCTCGGACACTCCCTATGCCAAAGTCTCAATTCCTCCGACAAAAACAACAACGACGACATTTCCTATGTTCACTGCGACGTCACCAACGACAAAGACGTCGAAACCGCCGTCAACGCTGCCGTCTCGCGACACGGCAAGCTCGACATCCTCTTCAGCAACGCCGGCATCACGGGCCGTTCCGACTGTTCTAACTCCATCACGGCCATCGACAGCGGTGACCTGAAGAGGGTCTTCGAGGTGAACGTCTTCGGTGCCTTCTACGCCGCCAAACACGCCGCTAAGGTCATGATTCCCAGAAAGAAAGGGAGCATTGTTTTCACTGCTAGCATCGCTTCTGTGTCGAATGCGGGTTGGGCGCACCCGTACGCGGCGTCGAAGAACGCAGTGGTGGGTTTGATGAAGAACCTGTGCGTGGAATTGGGGAAACATGGAATCAGAGTTAACTGTGTTTCGCCCTATGCGGTGGGGACTCCAATGCTGACACGTGCGATGAGGATGGAGAAGGAGAAAGCAGAGGAGATATATTTGGAGGCGGCGAACTTGAAGGGAGTGGTTTTAAAGGAAAAGGATGTGGCAGAAGCAACTTTGTTTTTGGCTAGTGATGAGTCAAAATACGTGAGTGGAGTGAATCTAGTTGTGGACGGAGGTTATACTACCACCAATTCTTCTTCCAAACAAGCTTTCACAAAGTTTTCTTTTAATGTTTAA 864 0.5174 MQACSSSDAPLSKRLDGKVALITGGASGIGEATAKLFLRHGAKVVIADIQDNLGHSLCQSLNSSDKNNNDDISYVHCDVTNDKDVETAVNAAVSRHGKLDILFSNAGITGRSDCSNSITAIDSGDLKRVFEVNVFGAFYAAKHAAKVMIPRKKGSIVFTASIASVSNAGWAHPYAASKNAVVGLMKNLCVELGKHGIRVNCVSPYAVGTPMLTRAMRMEKEKAEEIYLEAANLKGVVLKEKDVAEATLFLASDESKYVSGVNLVVDGGYTTTNSSSKQAFTKFSFNV* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1650 287 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 161 189 IPR020904 GO:0016491
Gso19g1650 287 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 271 IPR036291 -
Gso19g1650 287 Gene3D - 5 284 - -
Gso19g1650 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 97 108 IPR002347 -
Gso19g1650 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 162 IPR002347 -
Gso19g1650 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 174 193 IPR002347 -
Gso19g1650 287 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-LIKE 9 277 - -
Gso19g1650 287 Pfam Enoyl-(Acyl carrier protein) reductase 24 270 - -
Gso19g1650 287 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 9 277 - -
Gso19g1650 287 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Gso19g1650 287 PRINTS Glucose/ribitol dehydrogenase family signature 97 108 IPR002347 -
Gso19g1650 287 PRINTS Glucose/ribitol dehydrogenase family signature 148 164 IPR002347 -
Gso19g1650 287 PRINTS Glucose/ribitol dehydrogenase family signature 174 193 IPR002347 -
Gso19g1650 287 PRINTS Glucose/ribitol dehydrogenase family signature 195 212 IPR002347 -
Gso19g1650 287 PRINTS Glucose/ribitol dehydrogenase family signature 233 253 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1650 Gso-Chr19 45419143 45420337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1650 11 268 Miscellaneous Gene Families AT4G05530 30.916 1.76e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1650 - - gmx:100803985 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1650 19 45419143 45420337 Gso3g1679 3 42669999 42671310 GST