Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1604 ATGGAGGTTGGAGAAACAGAGAGAAACAAGCTTCAAGGGCAGGTTCCTTGGGTCCCCACCACCCCTTTGATGCCCATTCTTCCAAAACCAGGGCCGATCTGGACTCCTATGGAGGGAAACCACCTATACTCTCATTCCAATGGGTTAACAGCATGTTTTGAACCCTCCTGTTGCGCAGAGATAAACAACTGGTCTCACCCCCGGTCAGAACCTGTGGTTTTAGCCTATGGCAATGCCAAAACTCGAGTACCAATATCCTTTGATGAAATTCCCAGTTCAAGTAACGGCATTGCTGAACTTTTAACTCAGGGAGATGCTCCATCCGCATATTCAAATGCAACACATGCTGGGTTTTTTAACCAATTTGCTCATGCGTTTAATGCACAGTTCAACCCCCACCCGACCTATGCATTACTTAGCCATCAATATCATCTCTCTCGTGAGGAACCTTTTGTCAACACTGTCCATGATCAGTTCCAAGATCTTCAGGCAGGCACGTCATACTTTTCTTACTGTAGCAAGGCATTTCCCCAAATTGCCCCACATTTAGATAATGCCATTGCAGCAGAAACCAGACAAGATGCAATGACACAGATGACTATAGAAGAAAGGAACCGAGAGGGAGAAGAGAAAAATGTCCCAGCAGCAAAGTGCAATAATCCACACAGCAAACTCTATGACCCTGTTACAGAAATTGCTGCTGTATCTACACCACACAAGGAGAATCACAACCACAAGGAAATAAGCCATGATTTTGATCTGAATAAAACACCTCAACCAAAACCAAGAAGAAGAAAGCACCGCCCCAAGGTCATAAAAGAAGGCAAATCCAAAAGAACTAGCAAGCAAGTCAATGCAGAGGTTCTGTCAAAAGAAAAGCTAACTGACAAGAGAAAGGCAAGGAGGAAAGGATTGAACACAACTTCTACTCCTCAAACAGAAATGACAGGAGAATGGACAAAACCATTGATGCCTGAATCTGCCAAAAAGACATGTAGAAGGTCTTTGAATTTTGACATTGGAGAACCAAGAGATGACAATTCTGCATATGGAGAAACTATGCACTTTGGCAGAGACACCAGTGTGGTGATTGAAGAAACACGGGCTTGGATGATTGCCCACAATGGACATGAAAAGAGTGCAAAAACACTATCAAAATCAGTAGCACAATCAAGTCCAAATGACTTGAACAGCACAGGGTCAGGATTACATATAGTTGGTTCCAAAAGAAAACAATCTGGTATTGAACAGGTAGATAATAGCAGCATTAACCAGATTGGAGCACAATACAATGCTGTGCAGGCATACTGCCAAAAGTATTCGGTTCAATTTCCAAATGTTCAGAAGAAAAGGAGAAGTGAAAAGGGGAGAATTTCAAAGGCATCCCATAAATCTTCCATGACTGCCACAAAAGATGTACGACTGGCAACATGCCCACAAGAAGATGCTAGATCACATTCTTATGCATCAAGTCTCAACTGCTGGGCTTCTTCTGAATATAATGCAGCTGGGGTCTCTGTAATTACAGATACAGAAAGAGCTATTCATGATAAACCTCAATCATTAGAGTACAACTTATCTTTAGGGCAGAGGAGGCCAACCAAAAGAAGATCAAGAGTCCCTACTAGAATTCATGATTGTTCTTTACTGACCATAACCAGAAACTCTGATACCAAACTAGCACTTACTGCAAAAGAAACATGCAGTTCTGACAGACAAACATCTGGGGATGCAAAAAGACCACAGACATGCATTGATGCTTTAGTTGCAGAGATGCGAGGATCACTCACAAAAAAGAAACGAACTAGGAAGAGAAGTATTCCTGTCAATTCAAAATATTCCTGCACAAATGAAATGCAACAGCACCATAAAGTTGTGTTGGAAAATCATAGCATATCACACTCACACAACGCATTAGGTGTTGCTTGTGAAGACATATGGAAAAACATACATACTGTGGACACTTTAACCGAGCAATTTGAACGTCTAAACATATACAGAGAAGCCAGAGAGATTGTGTTGCATGGGCAAAATATGCTTGTCCCTTATAACCAGCAAAATCAGAAGAACAAGCGTCTTGTCCATGAATACGGCACCATCATTCCGTTCGAGGGCCCATTTGATCCCATAAGAAAACAGCGCCCACGACCTAAAGTTGACCTTGATGAGGAGACTAATAGAGTGTGGAAGCTTCTAATGTTGGATATAAACAGTCATGGGATCAATGGAACAGATGAAGACAAGGCCAAATGGTGGGAAGATGAACGAAATGTGTTCCGTGGACGAGCAGAATCATTTATTGCACGGATGCATCTTGTACAAGGAGACAGACGCTTTTCTCCATGGAAAGGATCAGTTGTGGATTCTGTTATTGGAGTTTTCCTCACTCAAAATGTCTCGGACCATCTTTCCAGTTCTGCATTCATGTCCCTGGCTGCTCGATTTCCTCTAAGGTCAAGTAGTAACTACAAAACATGCCCCGAGGAAAGCACAAGTTTGGTAATCAATGAGCCACAAGTGATCATTGTGGAGCCAGAAGAAAATGAAAAACTGGATGAGAAAATATCGGATCAATCTGTTTGTGAATTGAATTCTATGACAATAGACATCATTGAGCATTCTGAAGAAAGAGAAGTTGTTGACAGGAACAATTCCTGCAGAACTAATGGCGGCTTAATTGGTGTAGCAGATGAATCAAACAGCAAATTGCTGGAATCAGCTCAAAGACATAACAGTGAACATAGTCCAGTGGAGAGTGGAGCAATTAGTGCTGTGACTGGGGAAGGGCCAAAAAATTTATGTCATGGGAGTCTTGGGAAAGAGTTAAATGGCGTATTTTCATCCCAATGCTCTGCCATTACATCTCAAATATCAGGAGGTTTTTCAATTGATCAAAATCCTGAAAAGATAGGATCATTCTCAGATAGCAACTCAGAAATAGAAGACCTGTCTAGCGCTGCCAAGTACAATAGTTATTATAATAGAATTTCTTTCAGTGAGCTTTTAGAAATGGCAAGTTCAACCATGTTGCATGAAGTTAACAGTCAAAGAAGCAAATCAACTGAGAACTTAGGAGATACATGTGATCAGTCTATAGACATGAAGCATGACAACCTGGCAGAAAACTTGGAAAAATCGGATGTTACTCAAGGCTCCGCAGAAGCACCCATCACCAATGGATATACTTTTAAAATAACCCCAAACTCAGGAGTACTTGAGGTTAACTGTTATGATCCTCTCAAAATAGAAGTCCCATCAAGTGGCTCCTCAAAGGGTAAAGATGAGAATGACAATAGATCTAGTTTCCCAACAGAGTCTGACTGCCAGGCTGCAATTGTCCATTCTCAAGGACAAACTGAAGATCCAATGCAGAAAGCAAGGGGACTAGATTTTGGTAGGAATGAAAGCAGTAAGATAGATTCTTCCCCTGTAAAATTAAGGAGCAGGGAGCATGGAAAAGAGAAAAAGAATAACTTTGATTGGGATAGTTTAAGAATACAAGCAGAAGCTAAGGCAGGGAAAAGAGAAAAGACAGAGAACACCATGGACTCCTTGGACTGGGATGCTGTTAGACGCGCAGATGTCAGTGAAATTGCCAATGCAATCAAAGAAAGGGGCATGAACAACATGCTTGCTGAACGTATTCAGAGTTTCCTGAATCTATTGGTTGACAAGCATGGGGGCATCGATCTTGAGTGGCTGAGAGATGTTCCACCTGATCAAGCAAAAGAATTCTTGCTCAGCATAAGGGGATTGGGATTGAAAAGTGTGGAGTGTGTACGACTCTTAACACTACACCATCTTGCCTTTCCGGTGGACACAAATGTTGGACGTATAGCAGTAAGATTGGGATGGGTGCCTCTCCAGCCACTGCCAGAGTCACTACAGTTGCATCTTCTAGAATTGTACCCAGTGTTGGAGTCCATACAAAAATATCTCTGGCCCCGGCTCTGCAAGCTAGACCAAAGAACATTGTATGAGCTGCATTACCAGCTGATTACATTTGGAAAGGTCTTCTGTACTAAAAGCAAGCCAAATTGCAATGCTTGCCCAATGAGAGGGGAATGCAGACACTTTGCAAGTGCTTTTGCAAGTGCAAGGCTCGCCCTGCCAGGATCAGAGCAGAAGAGTATAGTTATCACAACTGGAAACAATGCAACTGAGCAGAACCCATCACTAGTCATCAATCAGCTGCCCTTGCTTCTCCCTGAAAATATAAACCAAGCAGAACTTCAACAAACAGAAGTGATCAGGCAACTAGAAGCAAAATCTGAAATCAACATCAGCCAACCTATTATTGAAGAGCCAGCAACTCCAGAGCCAGAATGCTCCCAAGTATCCGAAAATGATATAGAGGATACCTTCAATGAGGAATCATGTGAAATTCCCACCATCAAACTAGACATAGAAGAGTTCACTTTGAACTTACAAAACTATATGCAAGAAAACATGGAACTTCAAGAAGGTGAAATGTCAAAGGCCTTGGTTGCTCTACATCCAGGTGCTGCATGCATTCCTACACCCAAGCTGAAGAATGTGAGCCGGTTGCGAACAGAGCATTATGTTTATGAACTCCCTGATTCACATCCCCTTCTGAATGGGTGGAACAAGCGAGAACCTGATGATCCAGGCAAATACCTTCTAGCTATATGGACTCCAGGGGAGACAGCAGATTCTATACAGCCACCAGAAAGCAAATGCAGCTCTCAGGAATGTGGCCGGCTCTGTAATGAGAATGAATGTTTTTCATGCAACAGTTTCCGTGAAGCAAGTTCACAGATAGTTCGAGGGACACTCCTGATACCATGTCGAACAGCTATGAGAGGGAGCTTTCCGCTAAATGGCACCTATTTTCAAGTCAACGAGGTCTTTGCAGACAATGACTCAAGTCTTAACCCAATTAGTGTTCCCCGAAGTTGGATCTGGAACCTTGATAGGCGAACAGTGTATTTTGGAACCTCCATACCATCTATATTCAAAGGTTTATCAACACGAGAAATTCAACAATGCTTTTGGAGAGGATATGTCTGCGTGCGTGGATTTGACCGGGAAAAGCGAGCACCCCGTCCTCTGTTGGCTAGACTACACTTCCCGGTTAGCAGGTTGCCTAAGAATAGGGATAAGACCCAACAAGAGTCCGCATCGGCAAACTCACAAGGATTGAATTTTAAACAAAATCCAGAACAGCCAGAATTGCTTTCCAACATTCGGCAGACCGGAGGATCCTGA 5229 0.4261 MEVGETERNKLQGQVPWVPTTPLMPILPKPGPIWTPMEGNHLYSHSNGLTACFEPSCCAEINNWSHPRSEPVVLAYGNAKTRVPISFDEIPSSSNGIAELLTQGDAPSAYSNATHAGFFNQFAHAFNAQFNPHPTYALLSHQYHLSREEPFVNTVHDQFQDLQAGTSYFSYCSKAFPQIAPHLDNAIAAETRQDAMTQMTIEERNREGEEKNVPAAKCNNPHSKLYDPVTEIAAVSTPHKENHNHKEISHDFDLNKTPQPKPRRRKHRPKVIKEGKSKRTSKQVNAEVLSKEKLTDKRKARRKGLNTTSTPQTEMTGEWTKPLMPESAKKTCRRSLNFDIGEPRDDNSAYGETMHFGRDTSVVIEETRAWMIAHNGHEKSAKTLSKSVAQSSPNDLNSTGSGLHIVGSKRKQSGIEQVDNSSINQIGAQYNAVQAYCQKYSVQFPNVQKKRRSEKGRISKASHKSSMTATKDVRLATCPQEDARSHSYASSLNCWASSEYNAAGVSVITDTERAIHDKPQSLEYNLSLGQRRPTKRRSRVPTRIHDCSLLTITRNSDTKLALTAKETCSSDRQTSGDAKRPQTCIDALVAEMRGSLTKKKRTRKRSIPVNSKYSCTNEMQQHHKVVLENHSISHSHNALGVACEDIWKNIHTVDTLTEQFERLNIYREAREIVLHGQNMLVPYNQQNQKNKRLVHEYGTIIPFEGPFDPIRKQRPRPKVDLDEETNRVWKLLMLDINSHGINGTDEDKAKWWEDERNVFRGRAESFIARMHLVQGDRRFSPWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAARFPLRSSSNYKTCPEESTSLVINEPQVIIVEPEENEKLDEKISDQSVCELNSMTIDIIEHSEEREVVDRNNSCRTNGGLIGVADESNSKLLESAQRHNSEHSPVESGAISAVTGEGPKNLCHGSLGKELNGVFSSQCSAITSQISGGFSIDQNPEKIGSFSDSNSEIEDLSSAAKYNSYYNRISFSELLEMASSTMLHEVNSQRSKSTENLGDTCDQSIDMKHDNLAENLEKSDVTQGSAEAPITNGYTFKITPNSGVLEVNCYDPLKIEVPSSGSSKGKDENDNRSSFPTESDCQAAIVHSQGQTEDPMQKARGLDFGRNESSKIDSSPVKLRSREHGKEKKNNFDWDSLRIQAEAKAGKREKTENTMDSLDWDAVRRADVSEIANAIKERGMNNMLAERIQSFLNLLVDKHGGIDLEWLRDVPPDQAKEFLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGSEQKSIVITTGNNATEQNPSLVINQLPLLLPENINQAELQQTEVIRQLEAKSEINISQPIIEEPATPEPECSQVSENDIEDTFNEESCEIPTIKLDIEEFTLNLQNYMQENMELQEGEMSKALVALHPGAACIPTPKLKNVSRLRTEHYVYELPDSHPLLNGWNKREPDDPGKYLLAIWTPGETADSIQPPESKCSSQECGRLCNENECFSCNSFREASSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADNDSSLNPISVPRSWIWNLDRRTVYFGTSIPSIFKGLSTREIQQCFWRGYVCVRGFDREKRAPRPLLARLHFPVSRLPKNRDKTQQESASANSQGLNFKQNPEQPELLSNIRQTGGS* 1743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1604 1742 MobiDBLite consensus disorder prediction 447 471 - -
Gso3g1604 1742 MobiDBLite consensus disorder prediction 1709 1742 - -
Gso3g1604 1742 SMART endo3end 1172 1338 IPR003265 GO:0006284
Gso3g1604 1742 Coils Coil 1469 1489 - -
Gso3g1604 1742 PANTHER ROS1, PUTATIVE-RELATED 289 349 - -
Gso3g1604 1742 PANTHER ROS1, PUTATIVE-RELATED 1134 1710 - -
Gso3g1604 1742 PANTHER ROS1, PUTATIVE-RELATED 406 1110 - -
Gso3g1604 1742 PANTHER ROS1, PUTATIVE-RELATED 1 287 - -
Gso3g1604 1742 MobiDBLite consensus disorder prediction 1126 1154 - -
Gso3g1604 1742 MobiDBLite consensus disorder prediction 204 224 - -
Gso3g1604 1742 SUPERFAMILY DNA-glycosylase 761 1361 IPR011257 GO:0003824|GO:0006281
Gso3g1604 1742 MobiDBLite consensus disorder prediction 238 259 - -
Gso3g1604 1742 MobiDBLite consensus disorder prediction 276 303 - -
Gso3g1604 1742 MobiDBLite consensus disorder prediction 238 318 - -
Gso3g1604 1742 Gene3D - 1268 1356 IPR023170 -
Gso3g1604 1742 MobiDBLite consensus disorder prediction 1703 1742 - -
Gso3g1604 1742 MobiDBLite consensus disorder prediction 260 275 - -
Gso3g1604 1742 Pfam RRM in Demeter 1597 1697 IPR028925 -
Gso3g1604 1742 CDD ENDO3c 1186 1304 IPR003265 GO:0006284
Gso3g1604 1742 MobiDBLite consensus disorder prediction 1083 1154 - -
Gso3g1604 1742 Gene3D Hypothetical protein; domain 2 1183 1267 - -
Gso3g1604 1742 SMART ccc3 1339 1359 IPR003651 GO:0051539
Gso3g1604 1742 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 1134 1710 IPR044811 GO:0019104|GO:0035514|GO:0080111
Gso3g1604 1742 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 406 1110 IPR044811 GO:0019104|GO:0035514|GO:0080111
Gso3g1604 1742 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 289 349 IPR044811 GO:0019104|GO:0035514|GO:0080111
Gso3g1604 1742 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 1 287 IPR044811 GO:0019104|GO:0035514|GO:0080111
Gso3g1604 1742 MobiDBLite consensus disorder prediction 1102 1122 - -
Gso3g1604 1742 Pfam Permuted single zf-CXXC unit 1563 1594 IPR028924 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1604 Gso-Chr3 41959272 41970932 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1604 - - gmx:100787368 3449.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1604 3 41959272 41970932 Gso3g1604 3 41959272 41970932 ECH
Gso3g1604 3 41959272 41970932 Gso10g0571 10 6501317 6518408 PCT
Gso10g0571 10 6501317 6518408 Gso3g1604 3 41959272 41970932 PCT