Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1600 ATGGGTTTTGGAACTCGTTCTGCTCTCCGTCTTCGTCCCAATTCGCATTTCAACAATTCCATTTCCTTCTTCTGCTCCCAATCACTCACACTCTGTGAATCCGATCCCCAATATCAGAAGCGCCTTCAAAAGGTTCAAAAACTCGAAACATTAATAAGTCGCGGTCGCACGATCACCGCAAGAAGGTTCCTCAGATCCCTTCTTCTCACCAAAACCGCTTTCTCTTCTCTCTCCGAACTCCACGCTCACGTCTCCAAACCCTTCTTTTCGGACAATCTCTTATGGCTCTGTTCCGTCTCCAAAATGCTCGACGAAGCCACCGACTTGTACTCCACCATGCGAAAAGACGGTTTTGTCCCTTCCACGCGTTCCGTCAACCGCTTGCTCAGGACCCTGGTGGATTCCCGACACTTCGAGAAAACCCTCGCTGTCTTCGCCGACTTTATCGATTCTGGTACTCGGCCCGATGCTGTCGCTTATGGAAAGGCTGTTCAGGCGGCGGTGATGTTGAAGGACCTCGATAAGGGTTTTGAGTTGATGAAATCCATGGTAAAGGATGGAATGGGCCCTTCTGTGTTCGCTTATAACTTGGTATTGGGTGGGTTGTGTAAGGTGAGAAGAATCAAGGATGCTCGGAAGCTGTTCGATGAAATGATTCAGAGAAACATGGTTCCGAATACGGTTACTTATAACACGCTCATTGATGGGTACTGTAAGGTGGGTGGTATAGAGGAAGCTTTAGGCTTCAAGGAGAGGATGAAGGAACAGAATGTGGAGTGTAATCTTGTCACGTATAATTCCTTGTTAAATGGTCTTTGTGGTTCGGGGAGGGTGGATGATGCGAGGGAGGTGTTATTAGAGATGGAGGGCAGTGGTTTTTTGCCTGGTGGGTTTTTGAGTGTTGTGTTTGATGATCATTCGAATGGTGCAGGTGATGATGGTTTATTTGATGGAAAAGAAATAAGAATCGATGAGCGAACTTATTGTATTTTGTTGAATGGACTATGCAGGGTTGGGAGGATTGAAAAGGCTGAAGAGGTTCTGGCCAAACTCGTGGAAAATGGAGTTACTCCAAGCAAGATTTCATATAACATATTGGTGAATGCATATTGCCAAGAGGGTGATGTGAAGAAAGCTATACTGACAACTGAACAAATGGAGGAACGAGGGTTGGAGCCTAATCGAATCACTTTTAATACTGTGATTAGCAAGTTCTGTGAAACTGGGGAGGTGGACCAAGCAGAGACATGGGTTAGGAGGATGGTAGAGAAGGGTGTTTCCCCTACTGTGGAAACCTATAACTCGTTGATTAATGGTTATGGCCAGAAGGGCCATTTTGTCAGGTGTTTTGAGTTTCTTGATGAAATGGACAAGGCAGGGATAAAGCCTAATGTCATCAGCTATGGTTCTCTAATAAATTGTCTTTGCAAAGATCGTAAACTTATTGATGCTGAGATTGTGCTTGCAGATATGATAGGTCGTGGGGTTTCTCCAAATGCAGAAATATATAATATGCTCATTGAAGCTAGTTGCTCATTGACTAAATTGAAAGATGCTTTCAGATTTTTTGATGAAATGATACAAAGTGGAATAGATGCAACTCTTGTGACTTACAATACTTTGATAAATGGACTCGGAAGAAATGGAAGAGTAAAGAAAGCTGAGGATTTGTTTCTCCAAATGGCAGGCAAGGGATGTAACCCGGATGTAATAACATACAATTCTCTGATCTCAGGATATGCCAAGTCAGTAAACACCCAGAAATGCCTTGAATTGTATGACAAGATGAAGATTCTTGGCATAAAACCTACAGTTGGGACTTTTCACCCTTTGATCTATGCATGCAGGAAGGAAGGCGTGGTGACAATGGATAAAATGTTTCAAGAAATGTTACAAATGGATTTGGTCCCGGATCAATTTGTATATAATGAAATGATTTACAGTTATGCTGAAGATGGAAATGTTATGAAGGCAATGTCTTTGCACCAACAGATGGTTGATCAGGGAGTTGATTGCGACAAGGTGACTTACAATTCCTTAATTCTTGCATATCTTAGAGATAGAAGGGTTTCAGAAATAAAGCATCTTGTTGATGATATGAAGGCTAAAGGACTGGTTCCAAAAGTTGATACATATAACATTCTGATTAAGGGACTTTGTGACTTAAAAGATTTCAATGGTGCATACTTTTGGTATAGGGAAATGGTTGAGAGGGGTTTGCTTTTAAATGTCAGCATGTGCTACCAGCTAATTTCCGGACTAAGAGAGGAGGGAATGCTGCGAGAGGCTCAATTTGTATCCTCAGAATTGAGCATTAGAGGACTGAATAACTAG 2334 0.4246 MGFGTRSALRLRPNSHFNNSISFFCSQSLTLCESDPQYQKRLQKVQKLETLISRGRTITARRFLRSLLLTKTAFSSLSELHAHVSKPFFSDNLLWLCSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADFIDSGTRPDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSVVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDQAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLTKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKEGVVTMDKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDLKDFNGAYFWYREMVERGLLLNVSMCYQLISGLREEGMLREAQFVSSELSIRGLNN* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1600 777 TIGRFAM PPR: pentatricopeptide repeat domain 466 500 IPR002885 -
Gso3g1600 777 TIGRFAM PPR: pentatricopeptide repeat domain 263 295 IPR002885 -
Gso3g1600 777 TIGRFAM PPR: pentatricopeptide repeat domain 502 531 IPR002885 -
Gso3g1600 777 TIGRFAM PPR: pentatricopeptide repeat domain 432 465 IPR002885 -
Gso3g1600 777 TIGRFAM PPR: pentatricopeptide repeat domain 536 570 IPR002885 -
Gso3g1600 777 TIGRFAM PPR: pentatricopeptide repeat domain 396 430 IPR002885 -
Gso3g1600 777 TIGRFAM PPR: pentatricopeptide repeat domain 228 261 IPR002885 -
Gso3g1600 777 TIGRFAM PPR: pentatricopeptide repeat domain 327 359 IPR002885 -
Gso3g1600 777 TIGRFAM PPR: pentatricopeptide repeat domain 641 673 IPR002885 -
Gso3g1600 777 TIGRFAM PPR: pentatricopeptide repeat domain 675 707 IPR002885 -
Gso3g1600 777 TIGRFAM PPR: pentatricopeptide repeat domain 194 227 IPR002885 -
Gso3g1600 777 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Gso3g1600 777 TIGRFAM PPR: pentatricopeptide repeat domain 711 743 IPR002885 -
Gso3g1600 777 TIGRFAM PPR: pentatricopeptide repeat domain 571 605 IPR002885 -
Gso3g1600 777 Pfam PPR repeat 93 118 IPR002885 -
Gso3g1600 777 Pfam PPR repeat 641 670 IPR002885 -
Gso3g1600 777 Gene3D Tetratricopeptide repeat domain 222 293 IPR011990 GO:0005515
Gso3g1600 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Gso3g1600 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Gso3g1600 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 638 672 IPR002885 -
Gso3g1600 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Gso3g1600 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 708 742 IPR002885 -
Gso3g1600 777 SUPERFAMILY HCP-like 330 600 - -
Gso3g1600 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Gso3g1600 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Gso3g1600 777 Pfam PPR repeat family 361 406 IPR002885 -
Gso3g1600 777 Pfam PPR repeat family 428 477 IPR002885 -
Gso3g1600 777 Pfam PPR repeat family 535 582 IPR002885 -
Gso3g1600 777 Pfam PPR repeat family 674 721 IPR002885 -
Gso3g1600 777 Pfam PPR repeat family 225 273 IPR002885 -
Gso3g1600 777 Gene3D Tetratricopeptide repeat domain 623 774 IPR011990 GO:0005515
Gso3g1600 777 Gene3D Tetratricopeptide repeat domain 12 221 IPR011990 GO:0005515
Gso3g1600 777 Gene3D Tetratricopeptide repeat domain 412 516 IPR011990 GO:0005515
Gso3g1600 777 Gene3D Tetratricopeptide repeat domain 517 622 IPR011990 GO:0005515
Gso3g1600 777 Gene3D Tetratricopeptide repeat domain 315 411 IPR011990 GO:0005515
Gso3g1600 777 Pfam PPR repeat 321 349 IPR002885 -
Gso3g1600 777 Pfam PPR repeat 187 218 IPR002885 -
Gso3g1600 777 Pfam PPR repeat 494 526 IPR002885 -
Gso3g1600 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Gso3g1600 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Gso3g1600 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Gso3g1600 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Gso3g1600 777 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 18 770 - -
Gso3g1600 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Gso3g1600 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Gso3g1600 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 673 707 IPR002885 -
Gso3g1600 777 PANTHER ATPASE EXPRESSION PROTEIN 3 18 770 - -
Gso3g1600 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1600 Gso-Chr3 41922743 41926527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1600 399 776 Glycosyltransferase AT1G05670 27.062 1.79e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1600 - - gmx:100786292 1537.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1582 19 44729573 44732080 Gso3g1600 3 41922743 41926527 GST