Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1582 ATGGTAGAGAAGGGTGTTTCCCCGACTGTGGAAACCTATAACTTATTGATTAATGGTTATGGCCAGAGGGGCCATTTTGTCAGGTGTTTTGAGTTTCTTGATGAAATGGACAAGGCAGGGATAAAGCCTAATGTCATCAGCCATGGTTCTCTAATAAATTGTCTTTGCAAAGATCGTAAACTTATTGATGCTGAGATTGTGCTTGCAGATATGATAGGTCGTGGGGTTTCTCCGAATGCAGAAAGATATAATATGCTCATTGAAGCTAGTTGCTCATTGAGTAAATTGAAAGATGCTTTCAGATTTTTTGATGAAATGATACAAAGTGGAATAGACGCAACTCTTGTGACTCACAATACTTTGATAAATGGACTCGGAAGAAATGGAAGAGTAAAGGAAGCTGAGGATTTGTTTCTCCAAATGGCAGGCAAGGGATGTAACCCGGATGTAATAACATACCATTCTCTGATCTCAGGATATGCCAAGTCAGTAAACACCCAGAAATGCCTTGAATGGTATGATAAGATGAAGATGCTAGGCATAAAACCTACAGTTGGGACTTTTCACCCTTTGATCTGTGCATGCAGGAAGGAAGGCGTAGTGAAAATGGAGAAAATGTTTCAAGAAATGTTACAAATGGATTTAGTCCCAGATCAATTTGTATATAATGAAATGATTTACAGTTATGCTGAAGATGGAAATGTTCCTAAGGCAATGTCTTTGCACCAGCAGATGGTTGATCAGGGAGTTGATTCCGACAAGGTGACTTACAACTGCTTGATTCTAGCATATCTTAGAGATAGAAGGGTTTCTGAAACGAAGCATCTTGTTGATGATATGAAGGCTAAAGGACTGGTTCCAAAAGTTGATACTTATAACATTCTGGTTAAGGGGCATTGTGACTTAAAAGATTTCAATGGTGCATACTTTTGGTATAGGGAAATGGTAGACGGGGGTTTGCTTTTAAATGCCAGTATGTGCTACCAGCTAATTTCCGGGCTAAGAGAGGAGGGAATGCTGCGAGAGGCTCAAATTGTATCCTCAGAATTGAGCAGTAGAGGACTGAATAACTAG 1074 0.3966 MVEKGVSPTVETYNLLINGYGQRGHFVRCFEFLDEMDKAGIKPNVISHGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAERYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTHNTLINGLGRNGRVKEAEDLFLQMAGKGCNPDVITYHSLISGYAKSVNTQKCLEWYDKMKMLGIKPTVGTFHPLICACRKEGVVKMEKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVPKAMSLHQQMVDQGVDSDKVTYNCLILAYLRDRRVSETKHLVDDMKAKGLVPKVDTYNILVKGHCDLKDFNGAYFWYREMVDGGLLLNASMCYQLISGLREEGMLREAQIVSSELSSRGLNN* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1582 357 SUPERFAMILY HCP-like 77 179 - -
Gso19g1582 357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Gso19g1582 357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Gso19g1582 357 TIGRFAM PPR: pentatricopeptide repeat domain 83 111 IPR002885 -
Gso19g1582 357 TIGRFAM PPR: pentatricopeptide repeat domain 221 251 IPR002885 -
Gso19g1582 357 TIGRFAM PPR: pentatricopeptide repeat domain 291 323 IPR002885 -
Gso19g1582 357 TIGRFAM PPR: pentatricopeptide repeat domain 151 185 IPR002885 -
Gso19g1582 357 TIGRFAM PPR: pentatricopeptide repeat domain 12 45 IPR002885 -
Gso19g1582 357 TIGRFAM PPR: pentatricopeptide repeat domain 47 80 IPR002885 -
Gso19g1582 357 TIGRFAM PPR: pentatricopeptide repeat domain 255 287 IPR002885 -
Gso19g1582 357 TIGRFAM PPR: pentatricopeptide repeat domain 116 150 IPR002885 -
Gso19g1582 357 PANTHER ATPASE EXPRESSION PROTEIN 3 1 350 - -
Gso19g1582 357 Pfam PPR repeat 221 250 IPR002885 -
Gso19g1582 357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Gso19g1582 357 Gene3D Tetratricopeptide repeat domain 96 202 IPR011990 GO:0005515
Gso19g1582 357 Gene3D Tetratricopeptide repeat domain 1 95 IPR011990 GO:0005515
Gso19g1582 357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Gso19g1582 357 Pfam PPR repeat 74 106 IPR002885 -
Gso19g1582 357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Gso19g1582 357 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 1 350 - -
Gso19g1582 357 Pfam PPR repeat family 8 57 IPR002885 -
Gso19g1582 357 Pfam PPR repeat family 253 300 IPR002885 -
Gso19g1582 357 Pfam PPR repeat family 115 162 IPR002885 -
Gso19g1582 357 Gene3D Tetratricopeptide repeat domain 203 356 IPR011990 GO:0005515
Gso19g1582 357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Gso19g1582 357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Gso19g1582 357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1582 10 356 Glycosyltransferase AT1G05670 26.230 5.69e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1582 - - gmx:121172636 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1582 19 44729573 44732080 Gso3g1600 3 41922743 41926527 GST