Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1570 ATGGTGAAGGCCTACCTTCGATACGAGCCGGCGGCGTCGTTTGGAGTGATAGCGTCGGTGGTTTCCAACATAACATACGACAGCTCTGGCAAGCACCTCCTCTCTCCGGCACTCGAGAAGGTCGGCGTCTGGCACGTGCGCCAGGGCCTCTGCACCAAAACCCTAACTCCTTCCTCTTCGTCGCGCGGTCCTTCTCTCGCCGTCAATTCCATCGCCTCCTCCCCTTCCTCCCTGATTGCTAGTGGTTACGGTGATGGTAGCATAAGGATTTGGGACTCTGATAAAGGAACGTGTGAGACTACGTTGAATGGACACAAGGGAGCTGTCACTGCTCTTCGTTACAACAAGACTGGCTCCTTGCTCGCCTCTGGTAGCAAGGATAATGATGTTATTTTGTGGGATGTGGTTGGCGAGACTGGACTCTTTCGCCTTCGCGGTCACCGCGATCAGGTAACTGACGTTGTTTTCCTGAGTTCTGGGAAAAAGCTTGTTAGTTCCTCCAAAGACAAGTTCTTGAGAGTGTGGGATATTGATACCCAGCATTGTATGCAAATTGTTGGTGGCCATCATAGTGAAATATGGTCCCTAGATGTTGATCTGGATGAAAGATATCTGGTCACTGGTTCTGCGGATAATGAACTTCGTTTTTATTCAATCAAGCATGAGTCTGCGGATGGGGAGTCTGTAAATGGCGGTGAAGAATCTTCCATTCAAAATAAATGGGAAGTGTTGAGGCATTTTGGTGAAATTCAGCGGCAAAGTAAGGATAGAGTTGCGACGGTGCAGTTCAACAAGTCAGGAAGTCTGCTAGCTTGCCAAGTTGCTGGAAAAACGGTAGAAATATACCGTATATTGGATGATGCTGAAGCAAAGCGCAAAGCAAAACGAAGGGTTCACCGTAAGAAAGAGAAGAAACATAGTAAAGAGGCTTTGGAGGGAATAGAAAATGTAGACGGGAATAATGAGAACAAAGGAAATGATTCTTCTGTCACTCACGGGCCCATTGAAACAAGTAACCCCACAGTTACTGTGCCTGATGTTTTTAAGCTGTTGCATACTATCAGAGCTAGCAAAAAGATATGCTCCATTTCTTTCTGTCCAATCACTCCGAAGAATTCCCTGGGTAGTTTAGCATTGTCCCTCAACAATAATCTACTTGAGTTTTACTCCATTGAACAAGGGGAAACCAAAAAAACACTTGCTATTGATCTTCAAGGGCACCGTTCTGATGTAAGAAGTGTCACACTTAGTTCAGACAACACTTTTCTGATGTCAACCAGTCACAATGCTGTAAAGATTTGGAACCCAAGTACTGGCTCTTGCCTAAGGACCATTGATTCTGGGTATGGACTATGCAGTTTAATTCTTCCCACCAACAAGTATGGACTTGTTGGAACTAAAGATGGAACCATAGAAATTATTGACATTGGAAGTGGAACTTGTGTTGAAGTAATGGAAGCTCATGGTGGTTCTGTTCGCTCAATTGCTGCCCTACCGCATAAAAATGGTTTTGTCACAGGAAGTGCAGATCATGATGTGAAATTTTGGGAGTACCAAATTAAGCAAAAACCCGGTCAAGCTGCTAAGCAACTCATTGTGTCAAATGTCAGTACCATGAAAATGAATGATGATGCTCTTGTTGTCGCAATTAGCCCTGATGCTAAATATATTGCTGTTGCTCTCTTGGATAGTACTGTGAAGGTTCACTTTGCAGACACATTCAAATTCTTCCTTTCATTATATGGCCACAAGCTGCCTGTTCTGTGTATGGATATCTCCTCAGATGGAGATTTAATTGTAACTGGCTCTGCAGATAAAAATATAAAAATCTGGGGTTTGGACTTTGGTGACTGTCATAAATCCATCTTCGCGCATGCTGACAGTGTTATGGCAGTGCAATTTGTTCCCAAGACACATTATGTGTTCAGTGTTGGAAAAGATCGCCTAGTAAAATATTGGGATGCAGATAAATTTGAGCTGCTGTTGACTCTCGAAGGACATCATGCTGATATTTGGTGTCTTGCAGTCAGTAATCGTGGTGATTTTATCGTCACTGGATCTCATGATCGTTCTATTCGCCGCTGGGATCGCACTGAAGAGCAGTTCTTCATTGAGGAAGAAAAGGAGAAAAGGTTGGAGGAAATGTTTGAGGCTGATATTGACAATGCATTTGAAAACAAATATGCATTGAAGGAAGAAATACCAGAGGAGGGAGCTGTGGCTTTAGCTGGGAAACAAACCCAGGAAACCCTTTCTGCAACTGACTTAATTATTGAGAGACTAGACATTGCAGAAGCTGAAGAAAAGTGTATTGCAGAACATCAGGAGAAAAATAGCAGAAATGTTGCTGTTTTCCAAGCAAATCCGCTTATGAATGGGCTTTCACCTTCTGACTATGTTCTAAGTGCATTTTCAGATGTTCACTCCAATGATTTGGAGCAAACATTATTGGCTTTACCATTTTCAGATGCTTTGAAGCTTCTGTCGTACTTGAAAGACTGGACTTCATACTCTGATAAGGTTGAGCTTGTTTGCAGAATAGGCACGCTGCTGTTGCAGACACATTACAACCAGCTTCTTGCCACGCCAGCTGCCCGACCTATCTTGACAGTTTTCAGTGACATTTTTTATGAAAGGGTCAAGGGATGGAAAGACATCTTTGGTTTTAACCTTGCCGCCATGGATCATATTCAGCAAATGATGGCTTCAAGATCAGATGCTCTTTTTCATGATGCAAGATCAAAACTGCTAGAGATACGTGCTCGGCAATCCAAACGCTTAGAAGAAAGGTCTGATACTGGGGAAGTGAAGCGGAAGAAAAAGAAGACATAA 2832 0.434 MVKAYLRYEPAASFGVIASVVSNITYDSSGKHLLSPALEKVGVWHVRQGLCTKTLTPSSSSRGPSLAVNSIASSPSSLIASGYGDGSIRIWDSDKGTCETTLNGHKGAVTALRYNKTGSLLASGSKDNDVILWDVVGETGLFRLRGHRDQVTDVVFLSSGKKLVSSSKDKFLRVWDIDTQHCMQIVGGHHSEIWSLDVDLDERYLVTGSADNELRFYSIKHESADGESVNGGEESSIQNKWEVLRHFGEIQRQSKDRVATVQFNKSGSLLACQVAGKTVEIYRILDDAEAKRKAKRRVHRKKEKKHSKEALEGIENVDGNNENKGNDSSVTHGPIETSNPTVTVPDVFKLLHTIRASKKICSISFCPITPKNSLGSLALSLNNNLLEFYSIEQGETKKTLAIDLQGHRSDVRSVTLSSDNTFLMSTSHNAVKIWNPSTGSCLRTIDSGYGLCSLILPTNKYGLVGTKDGTIEIIDIGSGTCVEVMEAHGGSVRSIAALPHKNGFVTGSADHDVKFWEYQIKQKPGQAAKQLIVSNVSTMKMNDDALVVAISPDAKYIAVALLDSTVKVHFADTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNIKIWGLDFGDCHKSIFAHADSVMAVQFVPKTHYVFSVGKDRLVKYWDADKFELLLTLEGHHADIWCLAVSNRGDFIVTGSHDRSIRRWDRTEEQFFIEEEKEKRLEEMFEADIDNAFENKYALKEEIPEEGAVALAGKQTQETLSATDLIIERLDIAEAEEKCIAEHQEKNSRNVAVFQANPLMNGLSPSDYVLSAFSDVHSNDLEQTLLALPFSDALKLLSYLKDWTSYSDKVELVCRIGTLLLQTHYNQLLATPAARPILTVFSDIFYERVKGWKDIFGFNLAAMDHIQQMMASRSDALFHDARSKLLEIRARQSKRLEERSDTGEVKRKKKKT* 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1570 943 ProSitePatterns Trp-Asp (WD) repeats signature. 121 135 IPR019775 -
Gso3g1570 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 101 IPR001680 GO:0005515
Gso3g1570 943 MobiDBLite consensus disorder prediction 319 338 - -
Gso3g1570 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Gso3g1570 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 580 614 - -
Gso3g1570 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 220 IPR001680 GO:0005515
Gso3g1570 943 Pfam Dip2/Utp12 Family 798 898 IPR007148 -
Gso3g1570 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 622 663 IPR001680 GO:0005515
Gso3g1570 943 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 1 942 - -
Gso3g1570 943 SMART WD40_4 137 176 IPR001680 GO:0005515
Gso3g1570 943 SMART WD40_4 478 517 IPR001680 GO:0005515
Gso3g1570 943 SMART WD40_4 657 696 IPR001680 GO:0005515
Gso3g1570 943 SMART WD40_4 240 283 IPR001680 GO:0005515
Gso3g1570 943 SMART WD40_4 615 654 IPR001680 GO:0005515
Gso3g1570 943 SMART WD40_4 438 475 IPR001680 GO:0005515
Gso3g1570 943 SMART WD40_4 179 218 IPR001680 GO:0005515
Gso3g1570 943 SMART WD40_4 95 134 IPR001680 GO:0005515
Gso3g1570 943 SMART WD40_4 54 92 IPR001680 GO:0005515
Gso3g1570 943 SMART WD40_4 397 435 IPR001680 GO:0005515
Gso3g1570 943 SMART WD40_4 573 612 IPR001680 GO:0005515
Gso3g1570 943 SMART WD40_4 532 570 IPR001680 GO:0005515
Gso3g1570 943 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Gso3g1570 943 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Gso3g1570 943 PRINTS G protein beta WD-40 repeat signature 599 613 IPR020472 -
Gso3g1570 943 Pfam WD domain, G-beta repeat 51 92 IPR001680 GO:0005515
Gso3g1570 943 Pfam WD domain, G-beta repeat 578 611 IPR001680 GO:0005515
Gso3g1570 943 Pfam WD domain, G-beta repeat 96 134 IPR001680 GO:0005515
Gso3g1570 943 Pfam WD domain, G-beta repeat 479 516 IPR001680 GO:0005515
Gso3g1570 943 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Gso3g1570 943 Pfam WD domain, G-beta repeat 404 435 IPR001680 GO:0005515
Gso3g1570 943 Pfam WD domain, G-beta repeat 142 176 IPR001680 GO:0005515
Gso3g1570 943 Pfam WD domain, G-beta repeat 659 696 IPR001680 GO:0005515
Gso3g1570 943 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Gso3g1570 943 Gene3D - 335 448 IPR015943 GO:0005515
Gso3g1570 943 Gene3D - 657 708 IPR015943 GO:0005515
Gso3g1570 943 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 349 612 IPR011044 -
Gso3g1570 943 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 43 701 IPR011047 -
Gso3g1570 943 CDD WD40 404 696 - -
Gso3g1570 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 135 - -
Gso3g1570 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 485 517 IPR001680 GO:0005515
Gso3g1570 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 664 696 - -
Gso3g1570 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 622 654 - -
Gso3g1570 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 621 IPR001680 GO:0005515
Gso3g1570 943 Gene3D - 19 320 IPR015943 GO:0005515
Gso3g1570 943 CDD WD40 98 517 - -
Gso3g1570 943 MobiDBLite consensus disorder prediction 293 338 - -
Gso3g1570 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 485 517 - -
Gso3g1570 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 696 IPR001680 GO:0005515
Gso3g1570 943 Coils Coil 285 305 - -
Gso3g1570 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 179 - -
Gso3g1570 943 Gene3D - 449 647 IPR015943 GO:0005515
Gso3g1570 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 135 IPR001680 GO:0005515
Gso3g1570 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 404 444 IPR001680 GO:0005515
Gso3g1570 943 PANTHER WD REPEAT-CONTAINING PROTEIN 3 1 942 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1570 Gso-Chr3 41644776 41653635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1570 577 705 Miscellaneous Gene Families AT5G08390 27.907 5.62e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1570 K14556 - gmx:100800955 1812.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1570 3 41644776 41653635 Gso3g1570 3 41644776 41653635 ECH
Gso19g1547 19 44406842 44415803 Gso3g1570 3 41644776 41653635 GST