Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1547 ATGGTGAAGGCCTACCTCCGATACGAGCCGGCGGTGTCGTTTGGGGTGATAGCGTCGGTGGATTCCAACATTTCATACGACAGCTCCGGCAAACACCTCCTCTCTCCGGCACTCGAGAAAATTGGCGTCTGGCACGTGCGGCAGGGCCTCTGCACCAAAACCCTAACTCCTTCCTCTTCGTCGCGCGGTCCTTCTCCCTCCGTCACCTCCATTGCCTCCTCCCCTTCCTCCCTGATTGCTGGTGGTTACGGTGATGGTAGCATAAGGATTTGGGACTCCGATAAAGGAACGTGCGAGACTACGTTGAATGGACACAAGGGAGCTGTCACTACTCTTCGTTACAACAAGGCTGGCTCCTTGCTCGCCTCTGGTAGCAAGGATAATGATGTCATTTTGTGGGATGTGGTTGGCGAGACTGGGCTCTTTCGCCTTCGCGGCCACCGCGATCAGGTGACTGATGTTGTTTTCATGAGTTCTGGGAAAAAGCTTGTTAGTTCCTCCAAAGACAAGTTCTTGAGAGTGTGGGATATTGATACCCAGCACTGTATGCAAATTGTTGGTGGCCATCATAGTGAAATATGGTCCCTAGATGTTGATCTGGATGAAAGATATCTGGTCACTGGTTCTGCGGATAATGAACTTCGTTTTTATGCCATCAAGCATGAGTCTGTGGATGGGGAGTCTGTAAATGGCGGTGAAGAATCTTCTGTTCAAAACAAATGGGAAGTGTTGAGGCATTTTGGTGAAATTCAGCGGCAAAGTAAGGATAGAGTTGCAACGGTCCAGTTCAACAAGTCTGGAAGTCTGCTAGCTTGCCAAGTTGCTGGAAAGACGGTAGAAATATACCGCATATTGGATGATGCTGAAGCAAAGCGCAAAGCAAAACGAAGGGTTCACCGTAAGAAAGAGAAGAAACATAGTAAAGAAGCTTTGGAAGGAATAGAAAATGGAGACAGGAATAATGAGAACAAAGGAGACGATTCTTCTGTCACTCATGGGCCCATGGAAACAAGTAACCCCACAGTTACTGTGGCTGATGTTTTTAAGCTGTTGCATACTATCAGAGCTGGCAAAAAGATATGCTCTATTTCTTTCTGTCCAGTCACTCCGAAGAATTCACTGGCTAGTTTAGCGTTGTCCCTGAACAATAATCTACTTGAGTTTTACTCCATTGAACAAGGGGAAACCAAGAAAACACTTGCTATTGATCTCCAAGGGCACCGTTCTGATGTTAGAAGTGTCACGCTTAGTTCAGACAACACTTTTCTGATGTCAACCAGTCACAATGCTATAAAGATTTGGAACCCAAGTACTGGCTCTTGCCTAAGGACCATTGATTCTGGGTATGGACTGTGCAGTTTAATTCTTCCCACCAACAAGTATGGACTTGTTGGAACTAAAGATGGAACCATAGAAATTATTGACATTGGAAGTGGTACTTGTGTTGAAGTAATGGAAGCTCATGGTGGTTCCGTTCGCTCAATTGCTGCCCTTCCACATAAAAATGGTTTTGTCACAGGAAGTGCAGATCATGATGTGAAGTTTTGGGAGTACCAAATTAAGCAAAAACCCGGTCAAGCTGCTAAGCAACTCACAGTGTCAAATGTCAGTACCATGAAAATGAATGATGATGCTCTTGTGGTTGCAATTAGCCCTGATGCTAAATATATTGCTGTTGCTCTCTTGGATAGTACTGTGAAGGTTCACTTTGCAGACACATTCAAATTCTTCCTTTCATTATATGGCCACAAGCTGCCTGTTCTGTGTATGGATATCTCATCAGATGGAGATTTAATTGTAACCGGCTCTGCAGATAAAAATATAAAGATCTGGGGTTTGGACTTTGGTGACTGTCATAAATCCATCTTTGCGCATGCTGACAGTGTTATGGCAGTGCAATTTGTTCCCAAGACACATTATGTGTTCAGTGTTGGGAAAGATCGCCTAGTAAAATATTGGGATGCCGATAAATTTGAGCTGCTCTTGACACTTGAAGGACATCATGCTGATATTTGGTGTCTTGCAGTCAGTAATCGTGGTGATTTTATTGTCACTGGATCTCATGATCGTTCTATCCGCCTCTGGGATCGCACTGAAGAGCAGTTTTTCATTGAGGAAGAAAAGGAGAAAAGGTTGGAGGAAATGTTTGAGGCTGATATTGACAATGCATTTGAAAACAAGTATGTGTCAAAGGAAGAAATACCAGAAGAGGGAGCTGTGGCTTTAGCTGGGAAACAAACCCAGGAAACCCTTTCTGCAACTGACTTAATTATTGAGAGATTAGACATTGCAGAAGCTGAAGAAAAGCGTATTGCAGAACATCAGGAGGAGAAAAATAACAGAAATGTTGCTGTTTTCCAAGCAAATCCGCTTATGAATGGGCTTTCACCTTCTGACTATGTTCTAAGTGCATTTTCAGATGTTCACTCCAATGATTTGGAGCAAACATTATTGGCTTTACCATTTTCAGATGCTTTGAAGCTTCTGTCGTACTTGAAAGACTGGACTTCATACTCTGATAAGGTTGAGCTTGTTTGCAGAATAGGTACGCTGCTGTTGCAGACACATTACAACCAGCTTCTTACCACGCCAGCTGCCCGACCTATCTTGACTGTTTTCAGTGACATTTTTCATGAAAGGGTCAAGGGATGGAAAGACATCTTTGGTTTTAACCTTGCCGCCATGGATCATATTCAGCAAATGATGGCTTCAAGATCAGATGCTCTTTTTCATGATGCAAGATCAAAACTGCTAGAGATACGTGCTCGACAATCCAAACGTTTAGAAGAAAGGTCTGATACTGGGGAAGTGAAACGGAAGAAGAAGAAGACATAA 2835 0.4374 MVKAYLRYEPAVSFGVIASVDSNISYDSSGKHLLSPALEKIGVWHVRQGLCTKTLTPSSSSRGPSPSVTSIASSPSSLIAGGYGDGSIRIWDSDKGTCETTLNGHKGAVTTLRYNKAGSLLASGSKDNDVILWDVVGETGLFRLRGHRDQVTDVVFMSSGKKLVSSSKDKFLRVWDIDTQHCMQIVGGHHSEIWSLDVDLDERYLVTGSADNELRFYAIKHESVDGESVNGGEESSVQNKWEVLRHFGEIQRQSKDRVATVQFNKSGSLLACQVAGKTVEIYRILDDAEAKRKAKRRVHRKKEKKHSKEALEGIENGDRNNENKGDDSSVTHGPMETSNPTVTVADVFKLLHTIRAGKKICSISFCPVTPKNSLASLALSLNNNLLEFYSIEQGETKKTLAIDLQGHRSDVRSVTLSSDNTFLMSTSHNAIKIWNPSTGSCLRTIDSGYGLCSLILPTNKYGLVGTKDGTIEIIDIGSGTCVEVMEAHGGSVRSIAALPHKNGFVTGSADHDVKFWEYQIKQKPGQAAKQLTVSNVSTMKMNDDALVVAISPDAKYIAVALLDSTVKVHFADTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNIKIWGLDFGDCHKSIFAHADSVMAVQFVPKTHYVFSVGKDRLVKYWDADKFELLLTLEGHHADIWCLAVSNRGDFIVTGSHDRSIRLWDRTEEQFFIEEEKEKRLEEMFEADIDNAFENKYVSKEEIPEEGAVALAGKQTQETLSATDLIIERLDIAEAEEKRIAEHQEEKNNRNVAVFQANPLMNGLSPSDYVLSAFSDVHSNDLEQTLLALPFSDALKLLSYLKDWTSYSDKVELVCRIGTLLLQTHYNQLLTTPAARPILTVFSDIFHERVKGWKDIFGFNLAAMDHIQQMMASRSDALFHDARSKLLEIRARQSKRLEERSDTGEVKRKKKKT* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1547 944 Pfam Dip2/Utp12 Family 799 899 IPR007148 -
Gso19g1547 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 135 - -
Gso19g1547 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 135 IPR001680 GO:0005515
Gso19g1547 944 ProSitePatterns Trp-Asp (WD) repeats signature. 121 135 IPR019775 -
Gso19g1547 944 Gene3D - 15 320 IPR015943 GO:0005515
Gso19g1547 944 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 1 943 - -
Gso19g1547 944 MobiDBLite consensus disorder prediction 305 326 - -
Gso19g1547 944 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 71 701 IPR011047 -
Gso19g1547 944 CDD WD40 68 517 - -
Gso19g1547 944 Coils Coil 764 784 - -
Gso19g1547 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 580 614 - -
Gso19g1547 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 220 IPR001680 GO:0005515
Gso19g1547 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 622 663 IPR001680 GO:0005515
Gso19g1547 944 Pfam WD domain, G-beta repeat 578 611 IPR001680 GO:0005515
Gso19g1547 944 Pfam WD domain, G-beta repeat 479 516 IPR001680 GO:0005515
Gso19g1547 944 Pfam WD domain, G-beta repeat 142 176 IPR001680 GO:0005515
Gso19g1547 944 Pfam WD domain, G-beta repeat 96 134 IPR001680 GO:0005515
Gso19g1547 944 Pfam WD domain, G-beta repeat 61 92 IPR001680 GO:0005515
Gso19g1547 944 Pfam WD domain, G-beta repeat 404 435 IPR001680 GO:0005515
Gso19g1547 944 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Gso19g1547 944 Pfam WD domain, G-beta repeat 659 696 IPR001680 GO:0005515
Gso19g1547 944 Gene3D - 448 646 IPR015943 GO:0005515
Gso19g1547 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Gso19g1547 944 PANTHER WD REPEAT-CONTAINING PROTEIN 3 1 943 - -
Gso19g1547 944 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Gso19g1547 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 664 696 - -
Gso19g1547 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 696 IPR001680 GO:0005515
Gso19g1547 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 404 444 IPR001680 GO:0005515
Gso19g1547 944 CDD WD40 404 696 - -
Gso19g1547 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 101 IPR001680 GO:0005515
Gso19g1547 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 485 517 IPR001680 GO:0005515
Gso19g1547 944 Gene3D - 647 707 IPR015943 GO:0005515
Gso19g1547 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 622 654 - -
Gso19g1547 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 179 - -
Gso19g1547 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 621 IPR001680 GO:0005515
Gso19g1547 944 MobiDBLite consensus disorder prediction 293 338 - -
Gso19g1547 944 SUPERFAMILY Putative isomerase YbhE 23 92 - -
Gso19g1547 944 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Gso19g1547 944 PRINTS G protein beta WD-40 repeat signature 599 613 IPR020472 -
Gso19g1547 944 PRINTS G protein beta WD-40 repeat signature 683 697 IPR020472 -
Gso19g1547 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 485 517 - -
Gso19g1547 944 Coils Coil 285 305 - -
Gso19g1547 944 Gene3D - 329 447 IPR015943 GO:0005515
Gso19g1547 944 SMART WD40_4 615 654 IPR001680 GO:0005515
Gso19g1547 944 SMART WD40_4 438 475 IPR001680 GO:0005515
Gso19g1547 944 SMART WD40_4 137 176 IPR001680 GO:0005515
Gso19g1547 944 SMART WD40_4 397 435 IPR001680 GO:0005515
Gso19g1547 944 SMART WD40_4 179 218 IPR001680 GO:0005515
Gso19g1547 944 SMART WD40_4 240 283 IPR001680 GO:0005515
Gso19g1547 944 SMART WD40_4 95 134 IPR001680 GO:0005515
Gso19g1547 944 SMART WD40_4 478 517 IPR001680 GO:0005515
Gso19g1547 944 SMART WD40_4 54 92 IPR001680 GO:0005515
Gso19g1547 944 SMART WD40_4 532 570 IPR001680 GO:0005515
Gso19g1547 944 SMART WD40_4 657 696 IPR001680 GO:0005515
Gso19g1547 944 SMART WD40_4 573 612 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1547 Gso-Chr19 44406842 44415803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1547 577 705 Miscellaneous Gene Families AT5G08390 27.907 1.78e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1547 K14556 - gmx:100775810 1823.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1547 19 44406842 44415803 Gso3g1570 3 41644776 41653635 GST