Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1554 ATGGCTTTCTTTCTCTTTGCTATTTTAATCTTGATGGTCCCTTCTAGTAATGCCTATTGGCCACCTTCACCTGGCTACTGGCCAAGTTCCAAATTCAGGTCCATGAGTTTTTACAAAGGGTTTAGAAACCTCTGGGGCCCTCAGCACCAAAGCCTAGACCAAAATGCATTAACAATCTGGCTTGATAGAACCTCAGGAAGTGGATTCAAGTCAGTAAGGCCATTTCGATCCGGGTACTTTGGTGCTTCCATTAAGGTTCAACCTGGATACACTGCAGGTGTTATAACAGCTTTCTATCTCTCAAACAATGAAGCACATCCCGGTTTCCATGATGAAGTGGACATTGAGTTTCTAGGGACAACATTTGGAAAGCCTTACACTTTGCAGACCAATGTTTACATAAGAGGGAGTGGAGATGGGAGAATCATAGGCAGAGAGATGAAGTTCCATCTCTGGTTTGATCCTACCAAAGATTTTCATCACTATGCTATACTGTGGAGTCCTAAGGAAATAATATTCCTAGTGGATGATGTGCCAATTAGGAGGTACCCGAGGAAGAGTGGTGCAACATTTCCTCTGAGGCCAATGTGGCTATATGGTTCAATATGGGATGCATCATCATGGGCAACTGAGGATGGAAAGTACAAAGCTGATTATAAATACCAACCTTTTGTGGCAAAGTATACCAATTTCAAAGCTAGTGGTTGCTCAGCCTATGCCCCTCGTTGGTGCCATCCAGTTTCAGCCTCACCATATAGGTCTGGTGGGTTGAGTAGGCAACAACATAGTGCCATGAGATGGGTGCAAAGATACCACATGGTTTATAACTATTGTCAAGACCCCAAGAGAGATCACAGCCTAACACCTGAGTGTTGGGGTTGA 882 0.4399 MAFFLFAILILMVPSSNAYWPPSPGYWPSSKFRSMSFYKGFRNLWGPQHQSLDQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKVQPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGRIIGREMKFHLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPRKSGATFPLRPMWLYGSIWDASSWATEDGKYKADYKYQPFVAKYTNFKASGCSAYAPRWCHPVSASPYRSGGLSRQQHSAMRWVQRYHMVYNYCQDPKRDHSLTPECWG* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1554 293 PIRSF EndGlu_transf 2 293 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso3g1554 293 Pfam Glycosyl hydrolases family 16 39 220 IPR000757 GO:0004553|GO:0005975
Gso3g1554 293 Gene3D - 17 291 - -
Gso3g1554 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 254 291 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Gso3g1554 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 59 279 IPR013320 -
Gso3g1554 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 16 228 IPR000757 GO:0004553|GO:0005975
Gso3g1554 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3 292 - -
Gso3g1554 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 3 292 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1554 Gso-Chr3 41464223 41466823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1554 1 291 Glycoside Hydrolase AT3G44990 64.948 2.32e-143 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1554 K08235 - gmx:100796698 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1554 3 41464223 41466823 Gso3g1554 3 41464223 41466823 ECH
Gso19g1533 19 44266221 44268998 Gso3g1554 3 41464223 41466823 GST
Gso3g1554 3 41464223 41466823 Gso10g0464 10 5055456 5058340 PCT
Gso10g0464 10 5055456 5058340 Gso3g1554 3 41464223 41466823 PCT